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SRR1747035_scaffold_3_prodigal-single.1__X__X__00290
Bact-VirSRR1747035_scaffold_3_prodigal-single.1__X__X__00290
Identity
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-58
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nyrA03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 39.0 | 2.50e-01 | 100.0% | 13.0% |
| 2ednA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.50e-01 | 100.0% | 70.3% |
| 5fdyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.44e-01 | 100.0% | 80.5% |
| 5d77A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 42.0 | 3.79e-01 | 100.0% | 67.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3997528 | 101.1.2.148 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC5_C | 0.53 | 45.0 | 3.45e-01 | 100.0% | 61.4% |
| 5016955 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.34e-01 | 86.0% | 45.5% |
| 3767789 | 101.1.2.148 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC5_C | 0.53 | 44.0 | 3.39e-01 | 100.0% | 54.5% |
| 3472831 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 40.0 | 3.07e-01 | 91.2% | 89.1% |
| 3580334 | 101.1.2.148 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC5_C | 0.52 | 44.0 | 3.99e-01 | 98.2% | 87.5% |
| 3515049 | 101.1.2.148 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC5_C | 0.52 | 44.0 | 3.39e-01 | 100.0% | 58.6% |
| 3519367 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 42.0 | 3.20e-01 | 93.0% | 41.3% |
| 3322592 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 44.0 | 4.19e-01 | 100.0% | 88.6% |
| 3413123 | 3343.1.1.1 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal | 0.52 | 42.0 | 2.44e-01 | 96.5% | 22.3% |
| 3506828 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 42.0 | 3.43e-01 | 100.0% | 50.4% |
| 3506826 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 42.0 | 3.60e-01 | 100.0% | 59.0% |
| 3480796 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 41.0 | 3.13e-01 | 100.0% | 55.0% |
| 3412942 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 42.0 | 3.57e-01 | 100.0% | 61.0% |
| 3724442 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 43.0 | 4.06e-01 | 100.0% | 90.0% |
| 3612152 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 37.0 | 2.88e-01 | 89.5% | 71.5% |
| 3481802 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.50 | 41.0 | 3.49e-01 | 100.0% | 56.4% |
| 3586898 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.50 | 38.0 | 3.29e-01 | 89.5% | 62.1% |
D2
high
residues 66-120
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6gyzA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.66 | 48.0 | 4.24e-01 | 80.0% | 90.5% |
| 1vr9A01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.57 | 32.0 | 3.05e-01 | 87.3% | 43.8% |
| 4ru1A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 41.0 | 3.10e-01 | 76.4% | 87.8% |
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.56 | 42.0 | 4.11e-01 | 87.3% | 95.2% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.55 | 40.0 | 2.78e-01 | 80.0% | 47.3% |
| 2hqbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 41.0 | 3.21e-01 | 92.7% | 89.5% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 36.0 | 2.80e-01 | 70.9% | 76.7% |
| 1g5aA03 | 3.90.400.10 | Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 | 0.54 | 42.0 | 3.88e-01 | 87.3% | 69.4% |
| 7mi0A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 41.0 | 2.96e-01 | 90.9% | 67.2% |
| 1bjtA05 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.53 | 39.0 | 2.69e-01 | 87.3% | 30.9% |
| 1ka2A00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.52 | 42.0 | 2.51e-01 | 98.2% | 64.6% |
| 3i8nB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.52 | 38.0 | 3.11e-01 | 87.3% | 88.1% |
| 3og2A03 | 2.60.390.10 | Mainly Beta › Sandwich › beta-galactosidase, domain 3 › Beta-galactosidase, domain 3 | 0.51 | 34.0 | 3.00e-01 | 70.9% | 60.7% |
| 2p9mB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 38.0 | 3.09e-01 | 89.1% | 84.5% |
| 1yavB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 39.0 | 3.13e-01 | 94.5% | 91.1% |
| 4ba0A04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 41.0 | 3.20e-01 | 100.0% | 38.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3251055 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.70 | 40.0 | 3.74e-01 | 90.9% | 45.7% |
| 3399519 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.62 | 53.0 | 4.13e-01 | 100.0% | 60.0% |
| 3558915 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.60 | 51.0 | 4.23e-01 | 100.0% | 73.3% |
| 3981665 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 3.73e-01 | 87.3% | 57.3% |
| 5018482 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 47.0 | 4.02e-01 | 94.5% | 52.0% |
| 3258058 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.58 | 49.0 | 3.40e-01 | 100.0% | 33.2% |
| 3744032 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.58 | 47.0 | 3.66e-01 | 100.0% | 62.8% |
| 4341999 | 139.3.1.1 ↗ | few secondary structure elements › Multiheme cytochromes › Photosynthetic reaction centre (cytochrome subunit) › Photosynthetic reaction centre (cytochrome subunit) › CytoC_RC | 0.56 | 48.0 | 3.00e-01 | 100.0% | 35.5% |
| 1887256 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.54 | 40.0 | 3.32e-01 | 80.0% | 56.9% |
| 3957303 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.54 | 43.0 | 3.28e-01 | 100.0% | 69.4% |
| 3605422 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.53 | 42.0 | 3.17e-01 | 92.7% | 64.5% |
| 4248117 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.51 | 37.0 | 2.93e-01 | 83.6% | 74.3% |
| 5009363 | 4975.1.1.0 ↗ | a/b three-layered sandwiches › CbiG linker domain › CbiG linker domain › CbiG linker domain | 0.50 | 36.0 | 3.37e-01 | 78.2% | 70.7% |
| 4229813 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.50 | 42.0 | 2.74e-01 | 100.0% | 35.0% |
| 3305232 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.50 | 41.0 | 2.95e-01 | 94.5% | 54.9% |
| 3783452 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.50 | 40.0 | 2.90e-01 | 100.0% | 73.2% |