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SRR1747035_scaffold_3_prodigal-single.1__X__X__00292
Bact-VirSRR1747035_scaffold_3_prodigal-single.1__X__X__00292
Identity
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-39
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ekaA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.96 | 87.0 | 6.47e-01 | 100.0% | 43.5% |
| 3majA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.91 | 67.0 | 5.57e-01 | 78.4% | 48.3% |
| 3gl5A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.89 | 72.0 | 4.36e-01 | 89.2% | 15.6% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.89 | 70.0 | 6.09e-01 | 86.5% | 58.2% |
| 4fjqA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.89 | 78.0 | 4.44e-01 | 100.0% | 11.2% |
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 62.0 | 4.73e-01 | 78.4% | 35.4% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 60.0 | 4.75e-01 | 75.7% | 38.4% |
| 1u9lB00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.84 | 71.0 | 5.70e-01 | 94.6% | 50.0% |
| 2aamC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.84 | 73.0 | 4.24e-01 | 100.0% | 12.6% |
| 3fdiB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 72.0 | 4.60e-01 | 100.0% | 20.7% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.83 | 57.0 | 4.72e-01 | 73.0% | 40.9% |
| 3hdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.82 | 71.0 | 4.56e-01 | 100.0% | 22.0% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.82 | 61.0 | 3.96e-01 | 83.8% | 19.0% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.82 | 70.0 | 4.92e-01 | 100.0% | 37.7% |
| 6az1a00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 57.0 | 4.58e-01 | 75.7% | 38.9% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.81 | 56.0 | 5.46e-01 | 73.0% | 65.9% |
| 6k8nA02 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.80 | 65.0 | 4.50e-01 | 91.9% | 79.8% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 62.0 | 4.86e-01 | 91.9% | 56.1% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 57.0 | 4.92e-01 | 83.8% | 50.0% |
| 3iwgA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.78 | 56.0 | 3.85e-01 | 81.1% | 22.5% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 53.0 | 4.66e-01 | 73.0% | 47.4% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.77 | 60.0 | 5.02e-01 | 94.6% | 49.3% |
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.76 | 61.0 | 3.62e-01 | 100.0% | 16.0% |
| 3gagA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.75 | 58.0 | 3.62e-01 | 91.9% | 16.0% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.75 | 55.0 | 4.63e-01 | 83.8% | 44.9% |
| 4pxoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 59.0 | 4.20e-01 | 100.0% | 28.2% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.74 | 60.0 | 3.62e-01 | 100.0% | 14.1% |
| 3veaA02 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.72 | 59.0 | 5.36e-01 | 100.0% | 67.3% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.72 | 64.0 | 4.37e-01 | 100.0% | 65.6% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 54.0 | 4.78e-01 | 91.9% | 55.0% |
| 1fxzA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 53.0 | 3.48e-01 | 89.2% | 18.9% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 57.0 | 5.20e-01 | 100.0% | 73.6% |
| 1qgiA01 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.67 | 51.0 | 3.50e-01 | 86.5% | 23.1% |
| 6fhoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 54.0 | 3.47e-01 | 97.3% | 97.5% |
| 6f8hC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 57.0 | 4.38e-01 | 100.0% | 39.8% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.66 | 54.0 | 3.82e-01 | 91.9% | 72.6% |
| 2vqcA00 | 1.10.10.1470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like | 0.65 | 48.0 | 4.06e-01 | 83.8% | 44.3% |
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 48.0 | 4.11e-01 | 89.2% | 47.8% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.62 | 49.0 | 3.50e-01 | 91.9% | 27.7% |
| 1xviA02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.53 | 40.0 | 3.18e-01 | 91.9% | 69.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944753 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.93 | 69.0 | 5.08e-01 | 78.4% | 34.1% |
| 3272220 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.93 | 74.0 | 5.19e-01 | 91.9% | 30.5% |
| 4982795 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.91 | 70.0 | 5.73e-01 | 83.8% | 47.7% |
| 4991404 | 101.1.2.895 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2250 | 0.91 | 67.0 | 5.03e-01 | 78.4% | 36.3% |
| 4965236 | 101.1.2.952 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29290 | 0.90 | 69.0 | 5.84e-01 | 83.8% | 51.7% |
| 3869797 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.88 | 70.0 | 5.67e-01 | 89.2% | 48.6% |
| 5030563 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.88 | 64.0 | 4.63e-01 | 78.4% | 30.5% |
| 2091493 | 103.1.1.19 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA | 0.86 | 59.0 | 5.68e-01 | 73.0% | 62.8% |
| 4952882 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 64.0 | 4.99e-01 | 83.8% | 38.7% |
| 3842636 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 68.0 | 5.52e-01 | 89.2% | 48.6% |
| 5014656 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.85 | 73.0 | 6.12e-01 | 100.0% | 58.5% |
| 3768463 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.84 | 65.0 | 5.56e-01 | 86.5% | 55.0% |
| 3837790 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.81 | 72.0 | 5.10e-01 | 100.0% | 33.6% |
| 3469102 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.80 | 68.0 | 4.71e-01 | 100.0% | 30.0% |
| 3473498 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 68.0 | 5.16e-01 | 97.3% | 69.4% |
| 3253152 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.77 | 53.0 | 3.96e-01 | 73.0% | 30.0% |
| 5027938 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 62.0 | 4.46e-01 | 100.0% | 31.3% |
| 4088578 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.75 | 64.0 | 5.27e-01 | 94.6% | 56.9% |
| 4971469 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.74 | 57.0 | 3.73e-01 | 91.9% | 20.6% |
| 3689157 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.74 | 57.0 | 3.96e-01 | 100.0% | 23.9% |
| 3996571 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.72 | 50.0 | 4.74e-01 | 81.1% | 60.0% |
| 3979567 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.71 | 55.0 | 4.20e-01 | 89.2% | 38.9% |
| 4946659 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 54.0 | 3.90e-01 | 86.5% | 30.0% |
| 3794794 | 7516.1.1.51 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_21 | 0.70 | 57.0 | 3.49e-01 | 100.0% | 15.8% |
| 3509159 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.68 | 54.0 | 4.61e-01 | 89.2% | 55.0% |