←Back to structures
SRR1747035_scaffold_3_prodigal-single.1__X__X__00305
Bact-VirSRR1747035_scaffold_3_prodigal-single.1__X__X__00305
Identity
- Kingdom:
- phage
Quality
71.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-82
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 43.0 | 4.05e-01 | 70.7% | 70.6% |
| 2ghfA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.64 | 47.0 | 3.82e-01 | 85.4% | 61.8% |
| 7sbeA01 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.63 | 45.0 | 2.92e-01 | 80.5% | 60.1% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 45.0 | 4.49e-01 | 82.9% | 76.2% |
| 1t0fA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 46.0 | 3.20e-01 | 87.8% | 87.7% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 42.0 | 4.32e-01 | 85.4% | 82.1% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 42.0 | 3.52e-01 | 78.0% | 54.9% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.57 | 40.0 | 3.19e-01 | 78.0% | 85.3% |
| 3s40A01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.56 | 39.0 | 2.88e-01 | 78.0% | 54.9% |
| 3og5A01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 38.0 | 3.19e-01 | 78.0% | 91.8% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.53 | 39.0 | 2.96e-01 | 90.2% | 65.9% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.53 | 45.0 | 3.27e-01 | 100.0% | 86.2% |
| 2xocA01 | 3.30.40.140 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.53 | 42.0 | 3.63e-01 | 100.0% | 75.6% |
| 6v55A03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.53 | 40.0 | 2.80e-01 | 87.8% | 42.8% |
| 5tabA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 42.0 | 3.97e-01 | 92.7% | 71.7% |
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.52 | 39.0 | 2.92e-01 | 92.7% | 31.2% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 36.0 | 3.24e-01 | 78.0% | 77.6% |
| 7l15A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.18e-01 | 100.0% | 87.6% |
| 5c68A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 34.0 | 2.64e-01 | 70.7% | 44.0% |
| 1z2qA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 36.0 | 3.09e-01 | 90.2% | 41.7% |
| 1nndA01 | 3.10.10.10 | Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 0.50 | 39.0 | 3.17e-01 | 95.1% | 53.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3798022 | 387.1.3.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like | 0.64 | 45.0 | 4.73e-01 | 85.4% | 88.6% |
| 3244492 | 389.1.1.16 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 | 0.63 | 45.0 | 4.45e-01 | 80.5% | 82.2% |
| 5031996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 47.0 | 4.31e-01 | 80.5% | 65.5% |
| 3998140 | 387.1.1.34 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › EB | 0.61 | 45.0 | 4.31e-01 | 82.9% | 98.0% |
| 3278307 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 43.0 | 3.09e-01 | 80.5% | 81.4% |
| 3923087 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.59 | 51.0 | 3.05e-01 | 100.0% | 58.7% |
| 3931908 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.59 | 48.0 | 3.46e-01 | 100.0% | 34.1% |
| 3397117 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.58 | 47.0 | 4.13e-01 | 95.1% | 69.2% |
| 4423868 | 387.1.1.6 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Atracotoxin | 0.58 | 45.0 | 4.42e-01 | 85.4% | 82.2% |
| 3629517 | 11.2.1.57 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28126 | 0.57 | 43.0 | 2.72e-01 | 85.4% | 19.1% |
| 5031967 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.57 | 42.0 | 3.21e-01 | 85.4% | 100.0% |
| 4544763 | 4212.1.1.1 ↗ | beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N | 0.57 | 48.0 | 3.45e-01 | 100.0% | 66.9% |
| 4999182 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 3.78e-01 | 95.1% | 89.3% |
| 3483522 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.56 | 41.0 | 2.86e-01 | 85.4% | 36.0% |
| 4537352 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.55 | 39.0 | 2.75e-01 | 80.5% | 21.3% |
| 4092211 | 80.1.1.0 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain | 0.55 | 43.0 | 3.48e-01 | 95.1% | 57.9% |
| 3512515 | 247.1.1.45 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_2 | 0.55 | 42.0 | 2.58e-01 | 95.1% | 47.7% |
| 3224677 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.55 | 38.0 | 3.51e-01 | 78.0% | 61.7% |
| 3704117 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.55 | 39.0 | 3.33e-01 | 90.2% | 42.7% |
| 3306570 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.55 | 39.0 | 3.15e-01 | 80.5% | 81.1% |
| 3791485 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.55 | 44.0 | 2.74e-01 | 92.7% | 68.2% |
| 3938864 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.54 | 40.0 | 3.97e-01 | 82.9% | 100.0% |
| 3178758 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 42.0 | 2.70e-01 | 87.8% | 33.6% |
| 3250496 | 388.1.1.0 ↗ | few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like | 0.54 | 39.0 | 4.11e-01 | 82.9% | 88.6% |
| 3276009 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 37.0 | 2.41e-01 | 73.2% | 43.9% |
| 5076504 | 376.1.1.183 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Prok-RING_1 | 0.54 | 43.0 | 4.20e-01 | 100.0% | 84.0% |
| 5048927 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 40.0 | 2.76e-01 | 73.2% | 56.4% |
| 3472448 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 40.0 | 3.75e-01 | 87.8% | 72.7% |
| 3521873 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.54 | 41.0 | 3.46e-01 | 87.8% | 76.2% |
| 3574412 | 376.1.3.18 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_5 | 0.54 | 41.0 | 3.57e-01 | 92.7% | 52.9% |
| 3262730 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.63e-01 | 78.0% | 95.8% |
| 4025793 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.53 | 40.0 | 3.06e-01 | 95.1% | 47.2% |
| 3280900 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.52 | 37.0 | 2.59e-01 | 75.6% | 50.0% |
| 4661360 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.52 | 35.0 | 2.79e-01 | 78.0% | 92.2% |
| 3637895 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.51 | 38.0 | 3.13e-01 | 92.7% | 82.1% |
| 3594228 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.51 | 35.0 | 2.39e-01 | 85.4% | 88.2% |
| 3922987 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.50 | 35.0 | 3.19e-01 | 90.2% | 49.2% |