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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00009
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00009
Identity
- Kingdom:
- phage
Quality
74.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-53
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.68 | 43.0 | 3.90e-01 | 92.2% | 48.5% |
| 3b0xA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.66 | 56.0 | 4.81e-01 | 100.0% | 88.5% |
| 4h15A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 48.0 | 2.99e-01 | 78.4% | 32.6% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.65 | 58.0 | 3.61e-01 | 100.0% | 39.7% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.65 | 50.0 | 3.80e-01 | 86.3% | 73.4% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 55.0 | 4.32e-01 | 100.0% | 67.9% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.63 | 50.0 | 3.66e-01 | 92.2% | 87.6% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 48.0 | 3.68e-01 | 86.3% | 71.8% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 48.0 | 3.76e-01 | 86.3% | 76.9% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.62 | 53.0 | 3.32e-01 | 98.0% | 49.2% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 52.0 | 4.28e-01 | 100.0% | 68.0% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.61 | 53.0 | 4.94e-01 | 100.0% | 87.9% |
| 4gbjC02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 43.0 | 3.34e-01 | 88.2% | 69.6% |
| 3bm1A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.57 | 48.0 | 3.38e-01 | 100.0% | 49.7% |
| 1z82B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 49.0 | 3.64e-01 | 100.0% | 97.1% |
| 4kxfB02 | 1.10.1900.50 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › | 0.55 | 40.0 | 3.95e-01 | 82.4% | 100.0% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 48.0 | 3.49e-01 | 100.0% | 46.0% |
| 1yisA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.54 | 42.0 | 3.60e-01 | 100.0% | 69.9% |
| 3k92A01 | 1.10.8.1210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 40.0 | 3.81e-01 | 98.0% | 68.3% |
| 3b5oA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.52 | 43.0 | 2.87e-01 | 100.0% | 67.4% |
| 2kzcA00 | 1.10.790.20 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 | 0.52 | 46.0 | 3.89e-01 | 100.0% | 72.9% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 45.0 | 2.93e-01 | 98.0% | 23.5% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.51 | 40.0 | 3.31e-01 | 98.0% | 46.2% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 44.0 | 3.25e-01 | 100.0% | 63.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3708550 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.76 | 56.0 | 3.54e-01 | 78.4% | 20.8% |
| 5012954 | 632.2.1.40 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 | 0.75 | 51.0 | 3.61e-01 | 70.6% | 55.0% |
| 3204106 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.72 | 66.0 | 5.59e-01 | 100.0% | 87.5% |
| 4237257 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.69 | 61.0 | 5.07e-01 | 100.0% | 77.8% |
| 3598267 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 58.0 | 4.76e-01 | 96.1% | 89.5% |
| 3187460 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.68 | 57.0 | 3.95e-01 | 98.0% | 50.3% |
| 5057214 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.67 | 58.0 | 4.85e-01 | 100.0% | 70.0% |
| 5051429 | 2002.3.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 | 0.62 | 52.0 | 3.11e-01 | 98.0% | 52.4% |
| 1487360 | 3929.1.1.1 ↗ | alpha bundles › THO1 C-terminal domain › THO1 C-terminal domain › THO1 C-terminal domain › Tho1_MOS11_C | 0.60 | 49.0 | 4.57e-01 | 94.1% | 73.1% |
| 3935636 | 210.1.4.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 | 0.59 | 44.0 | 2.74e-01 | 82.4% | 37.2% |
| 4284927 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.59 | 50.0 | 4.77e-01 | 100.0% | 81.0% |
| 3274254 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.59 | 50.0 | 4.04e-01 | 100.0% | 55.2% |
| 3727464 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.58 | 44.0 | 3.37e-01 | 90.2% | 73.6% |
| 4549030 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.57 | 49.0 | 4.42e-01 | 98.0% | 70.0% |
| 1885927 | 101.1.2.91 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_CodY | 0.57 | 42.0 | 3.69e-01 | 80.4% | 55.1% |
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.55 | 37.0 | 3.05e-01 | 72.5% | 48.6% |
| 4964513 | 622.4.1.66 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › FxsA | 0.54 | 44.0 | 3.74e-01 | 98.0% | 69.5% |