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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00011
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00011
Identity
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-65
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.69 | 55.0 | 4.70e-01 | 98.3% | 53.6% |
| 1gjsA00 | 1.10.8.40 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain | 0.69 | 49.0 | 4.81e-01 | 91.5% | 69.2% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.66 | 39.0 | 3.78e-01 | 72.9% | 51.5% |
| 1d8cA03 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.63 | 45.0 | 3.51e-01 | 78.0% | 80.0% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 36.0 | 2.50e-01 | 74.6% | 17.4% |
| 4abxC01 | 6.10.140.1080 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 41.0 | 3.78e-01 | 74.6% | 66.2% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.56 | 40.0 | 3.68e-01 | 79.7% | 90.6% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.56 | 45.0 | 3.97e-01 | 93.2% | 62.5% |
| 2bnkA00 | 1.10.8.600 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like | 0.55 | 42.0 | 4.18e-01 | 100.0% | 82.8% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.53 | 43.0 | 3.84e-01 | 91.5% | 94.4% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.52 | 35.0 | 2.58e-01 | 86.4% | 23.3% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 35.0 | 2.43e-01 | 72.9% | 22.6% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 41.0 | 3.35e-01 | 91.5% | 74.1% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.50 | 41.0 | 3.46e-01 | 100.0% | 79.7% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.50 | 41.0 | 3.61e-01 | 94.9% | 80.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938194 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.82 | 57.0 | 6.51e-01 | 89.8% | 95.6% |
| 4932863 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.71 | 44.0 | 3.97e-01 | 78.0% | 46.3% |
| 4934193 | 2.21.1.5 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 | 0.71 | 44.0 | 3.19e-01 | 78.0% | 23.1% |
| 4960595 | 101.1.1.549 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_5 | 0.66 | 43.0 | 3.89e-01 | 76.3% | 47.5% |
| 4203362 | 181.1.1.15 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PF29197 | 0.66 | 54.0 | 5.62e-01 | 89.8% | 96.4% |
| 4927595 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.65 | 54.0 | 4.89e-01 | 91.5% | 71.2% |
| 4615565 | 101.1.1.249 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SGIII | 0.64 | 42.0 | 3.75e-01 | 76.3% | 47.1% |
| 5025683 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.64 | 51.0 | 5.21e-01 | 96.6% | 98.2% |
| 4473504 | 304.136.1.3 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII | 0.64 | 42.0 | 3.65e-01 | 76.3% | 44.4% |
| 4189431 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 40.0 | 4.19e-01 | 74.6% | 70.9% |
| 4362811 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 40.0 | 4.15e-01 | 74.6% | 70.9% |
| 5082367 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.61 | 50.0 | 4.93e-01 | 91.5% | 90.8% |
| 4953551 | 4049.1.1.0 ↗ | alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like | 0.61 | 46.0 | 4.51e-01 | 83.1% | 87.7% |
| 5040720 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.60 | 41.0 | 2.63e-01 | 71.2% | 31.5% |
| 5068278 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.60 | 50.0 | 4.07e-01 | 89.8% | 56.2% |
| 4280714 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.59 | 44.0 | 4.50e-01 | 81.4% | 85.5% |
| 4652008 | 181.2.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C | 0.59 | 49.0 | 4.57e-01 | 96.6% | 75.6% |
| 3988991 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.57 | 47.0 | 4.12e-01 | 93.2% | 68.9% |
| 4518433 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.56 | 50.0 | 4.32e-01 | 100.0% | 76.7% |
| 3521681 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.56 | 43.0 | 3.81e-01 | 84.7% | 64.4% |
| 3917977 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.56 | 43.0 | 3.86e-01 | 88.1% | 68.9% |
| 5059049 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.56 | 46.0 | 2.95e-01 | 93.2% | 32.5% |
| 3226082 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.55 | 41.0 | 3.36e-01 | 79.7% | 42.7% |
| 3547115 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.55 | 42.0 | 3.72e-01 | 84.7% | 64.4% |
| 3811835 | 7076.1.1.0 ↗ | 0.53 | 43.0 | 4.24e-01 | 98.3% | 100.0% | |
| 4981749 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.52 | 43.0 | 4.29e-01 | 91.5% | 91.7% |