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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00039

Bact-Vir

SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00039

Identity

Kingdom:
phage

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.72 57.0 4.90e-01 87.9% 73.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.54e-01 100.0% 93.0%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 50.0 5.08e-01 77.3% 80.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.20e-01 100.0% 86.4%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 51.0 5.52e-01 100.0% 98.1%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.18e-01 100.0% 85.5%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 48.0 3.26e-01 75.8% 53.8%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.01e-01 100.0% 84.1%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 52.0 3.52e-01 90.9% 56.5%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.28e-01 92.4% 52.0%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.37e-01 93.9% 52.8%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.45e-01 75.8% 76.9%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 50.0 3.00e-01 89.4% 20.0%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.32e-01 93.9% 81.5%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 51.0 3.41e-01 93.9% 53.6%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 3.83e-01 87.9% 56.1%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.63e-01 78.8% 60.3%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 47.0 4.30e-01 86.4% 82.8%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 4.23e-01 72.7% 76.6%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.60 49.0 4.40e-01 100.0% 64.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 5.11e-01 90.9% 100.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.17e-01 93.9% 55.3%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.59 40.0 3.39e-01 72.7% 80.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.89e-01 97.0% 95.6%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.07e-01 95.5% 99.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.58e-01 95.5% 85.3%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.57 46.0 3.98e-01 90.9% 72.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 45.0 3.18e-01 92.4% 47.5%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 40.0 3.10e-01 77.3% 60.1%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 2.93e-01 97.0% 42.3%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.91e-01 92.4% 61.7%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 45.0 3.02e-01 92.4% 42.0%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 3.49e-01 72.7% 85.1%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.41e-01 86.4% 70.4%
3c5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.83e-01 95.5% 63.0%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.08e-01 75.8% 69.6%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.54 47.0 4.08e-01 100.0% 77.9%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 41.0 3.65e-01 100.0% 55.8%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 31.0 3.48e-01 86.4% 74.0%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.81e-01 87.9% 92.9%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 43.0 3.55e-01 92.4% 87.1%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 42.0 3.54e-01 92.4% 94.2%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.78e-01 92.4% 52.6%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 3.35e-01 89.4% 84.6%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.50e-01 95.5% 72.9%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 3.50e-01 95.5% 97.0%
1v7pB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 43.0 3.54e-01 95.5% 89.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 41.0 3.96e-01 90.9% 92.0%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.51 42.0 3.45e-01 92.4% 50.4%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 41.0 2.85e-01 93.9% 48.1%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.35e-01 95.5% 87.5%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 2.79e-01 86.4% 54.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 3.81e-01 98.5% 91.5%
4qflA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.50 41.0 3.08e-01 90.9% 67.3%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.77 52.0 5.79e-01 98.5% 92.0%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 52.0 5.60e-01 100.0% 90.9%
151542 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.38e-01 100.0% 78.8%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 53.0 5.07e-01 100.0% 68.0%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.50e-01 100.0% 81.5%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 52.0 5.67e-01 100.0% 94.4%
3509362 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.72 53.0 4.72e-01 78.8% 70.2%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 52.0 4.88e-01 100.0% 63.7%
3296864 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.71 48.0 5.05e-01 100.0% 78.3%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.71 53.0 4.41e-01 100.0% 46.1%
959119 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.71 52.0 5.67e-01 100.0% 96.3%
3675511 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.71 53.0 4.98e-01 100.0% 66.3%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.40e-01 100.0% 77.0%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.70 49.0 4.03e-01 86.4% 41.7%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 52.0 5.42e-01 100.0% 88.3%
4059465 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.68 51.0 5.10e-01 100.0% 77.9%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.68 51.0 5.29e-01 100.0% 88.3%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.39e-01 100.0% 90.0%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.37e-01 100.0% 90.0%
5061930 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 47.0 4.15e-01 72.7% 76.8%
3467678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.09e-01 100.0% 46.4%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.07e-01 80.3% 96.7%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.18e-01 100.0% 86.2%
4939442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.35e-01 89.4% 39.8%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 46.0 4.81e-01 75.8% 98.3%
3935101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.09e-01 100.0% 87.7%
3178444 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.64 46.0 3.68e-01 78.8% 51.4%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 49.0 4.62e-01 100.0% 70.0%
3789432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 51.0 3.07e-01 89.4% 23.6%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.62 48.0 4.78e-01 98.5% 80.0%
4031789 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.62 41.0 4.31e-01 71.2% 75.0%
2225 5.1.4.405 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase, YNCE, choice_anch_I 0.62 51.0 3.37e-01 93.9% 52.8%
3989890 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.62 42.0 4.23e-01 71.2% 70.8%
146236 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 48.0 4.15e-01 100.0% 52.8%
5022781 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 48.0 3.05e-01 86.4% 18.6%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 3.80e-01 100.0% 45.0%
3561132 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.61 52.0 3.04e-01 100.0% 37.1%
4112353 5.1.4.279 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF26550 0.60 50.0 3.18e-01 95.5% 48.5%
4026170 5.1.4.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Glu_cyclase_2 0.60 49.0 3.28e-01 97.0% 46.5%
3968013 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 3.36e-01 95.5% 56.9%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 51.0 4.69e-01 97.0% 75.3%
3821398 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 47.0 3.15e-01 93.9% 45.2%
4029623 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 2.94e-01 93.9% 22.2%
3470133 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.58 50.0 4.21e-01 100.0% 56.1%
3969290 243.4.1.1 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N 0.58 42.0 4.24e-01 83.3% 76.9%
4938265 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.58 42.0 4.45e-01 81.8% 85.0%
3912726 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 50.0 4.92e-01 97.0% 92.9%
3269599 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.58 50.0 4.43e-01 100.0% 81.0%
3680574 59.1.3.6 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › PF30943 0.58 43.0 3.95e-01 81.8% 87.8%
5063409 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.58 47.0 3.36e-01 90.9% 68.3%
4646871 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.57 47.0 3.86e-01 92.4% 92.0%
3991370 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.57 43.0 3.10e-01 81.8% 53.0%
4232371 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.57 47.0 3.91e-01 92.4% 95.0%
4967968 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 39.0 3.40e-01 72.7% 69.5%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 50.0 4.87e-01 100.0% 91.9%
3727542 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.27e-01 100.0% 71.1%
3709300 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.56e-01 92.4% 28.5%
3953959 4.1.1.424 ↗ beta barrels › SH3 › SH3 › SH3 › PF29823 0.54 38.0 4.06e-01 75.8% 100.0%
3839477 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.54 44.0 3.62e-01 92.4% 90.4%
4084890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.57e-01 98.5% 98.5%
4012836 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.46e-01 95.5% 88.0%
4941490 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 34.0 2.76e-01 77.3% 31.9%
3700859 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.61e-01 95.5% 58.8%
5032977 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.01e-01 100.0% 77.5%
5069121 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.51 37.0 3.82e-01 100.0% 88.3%