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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00044

Bact-Vir

SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00044

Identity

Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.81 67.0 6.74e-01 92.3% 94.1%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 6.14e-01 100.0% 93.8%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.74 62.0 4.83e-01 98.1% 92.6%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.82e-01 96.2% 87.5%
1uz3B00 1.10.1240.40 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › ENT domain 0.71 60.0 4.99e-01 100.0% 77.3%
2r7rA03 1.10.10.1990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Viral RNA-directed RNA polymerase, 4-helical domain 0.63 50.0 4.54e-01 94.2% 64.5%
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 41.0 3.37e-01 71.2% 45.5%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.58 46.0 4.10e-01 98.1% 80.2%
3mopK00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 48.0 3.95e-01 94.2% 58.1%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 3.53e-01 100.0% 73.5%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.56 46.0 4.07e-01 96.2% 95.0%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.55 44.0 4.11e-01 96.2% 87.1%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 44.0 4.10e-01 96.2% 100.0%
2o4cA03 3.30.1370.170 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain 0.52 42.0 3.67e-01 98.1% 86.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1103158 6119.1.1.2 ↗ alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB › PF25869 0.81 67.0 6.69e-01 92.3% 90.6%
5027340 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.76 63.0 5.25e-01 92.3% 72.2%
3809136 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.71 57.0 5.43e-01 96.2% 87.7%
4073017 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 55.0 5.51e-01 94.2% 87.3%
3251818 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.70 58.0 5.51e-01 100.0% 83.1%
5061090 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.69 55.0 5.09e-01 94.2% 75.7%
3834278 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.69 55.0 5.24e-01 94.2% 83.1%
5061410 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.68 56.0 5.23e-01 98.1% 91.4%
147067 3276.1.1.1 ↗ alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › MogR_DNAbind 0.67 53.0 5.03e-01 94.2% 75.0%
3350214 165.1.1.2 ↗ alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › RFC1 0.61 46.0 4.69e-01 90.4% 96.0%
3636300 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.58 41.0 4.17e-01 76.9% 84.0%
4024889 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.55 45.0 3.45e-01 90.4% 93.3%
4503392 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.53 41.0 3.88e-01 94.2% 77.1%
4390167 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.53 40.0 3.82e-01 88.5% 81.5%
3913629 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.53 44.0 3.89e-01 96.2% 85.0%
4076215 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.52 42.0 3.93e-01 92.3% 75.7%
D2 medium residues 53-166
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13306.13 best LRR_5 29.9 6.60e-07 79.8% 39.4%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fd0A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.72 67.0 4.84e-01 100.0% 55.6%
4gt6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 64.0 4.37e-01 100.0% 29.3%
2xwtC00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 65.0 5.10e-01 100.0% 66.2%
2v9sA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.69 63.0 5.16e-01 100.0% 72.9%
3zyiA01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.67 61.0 4.45e-01 99.1% 39.9%
1dceA03 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.66 58.0 5.51e-01 95.6% 82.4%
1xwdC00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.66 59.0 4.67e-01 100.0% 63.2%
7ax1A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.66 58.0 5.40e-01 97.4% 85.2%
4xsqB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.65 59.0 5.10e-01 100.0% 72.6%
4u7lA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.65 58.0 5.56e-01 100.0% 93.2%
4b8cJ01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.65 56.0 4.69e-01 95.6% 58.8%
1ygyA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 48.0 4.54e-01 78.1% 96.3%
1ogqA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.64 58.0 4.23e-01 100.0% 48.6%
4e5nC01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 47.0 4.51e-01 78.1% 97.7%
3kb6A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 47.0 4.50e-01 77.2% 100.0%
6biiA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 47.0 4.41e-01 78.1% 93.5%
1hkuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 47.0 4.50e-01 78.1% 99.2%
1h6uA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.62 56.0 5.03e-01 100.0% 84.6%
4ezgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.61 56.0 4.74e-01 100.0% 64.3%
3hg7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 45.0 4.39e-01 78.9% 99.2%
1nytA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 37.0 3.47e-01 84.2% 52.4%
3vnrA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.56 50.0 3.47e-01 100.0% 62.8%
4hq1A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.55 49.0 4.76e-01 98.2% 93.7%
3f6tA03 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 43.0 3.55e-01 92.1% 59.1%
3dkpA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.29e-01 97.4% 41.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2576217 207.1.1.21 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.79 66.0 5.22e-01 98.2% 46.7%
4851734 2004.1.1.565 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LRR_1, LRR_8 0.70 64.0 5.60e-01 100.0% 88.0%
3508418 207.1.1.141 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5, LRR_8 0.68 62.0 4.17e-01 99.1% 37.8%
4620512 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.68 63.0 4.00e-01 100.0% 50.5%
3938490 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.67 57.0 4.55e-01 90.4% 63.7%
3754436 207.1.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.66 60.0 4.15e-01 100.0% 34.6%
4967280 2003.1.11.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like 0.65 48.0 4.40e-01 77.2% 84.7%
3862223 207.1.1.148 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_9 0.65 57.0 4.65e-01 95.6% 55.7%
5025392 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.65 47.0 4.61e-01 75.4% 100.0%
3699632 207.1.1.102 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.65 59.0 4.72e-01 100.0% 58.2%
3567295 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.65 57.0 4.87e-01 95.6% 65.0%
3749693 207.1.1.144 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4 0.65 57.0 4.78e-01 95.6% 61.6%
3828495 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 57.0 4.04e-01 98.2% 31.7%
2059010 207.1.1.130 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 0.65 58.0 4.28e-01 100.0% 46.7%
1489204 207.1.1.234 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6, LRR_8, LRR_EndoS 0.64 59.0 5.05e-01 100.0% 76.4%
3904491 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 59.0 4.82e-01 100.0% 73.2%
1338388 207.1.1.206 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6, LRR_8, LRR_9 0.64 59.0 4.95e-01 100.0% 73.3%
5001056 207.1.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4 0.64 58.0 4.02e-01 100.0% 36.1%
4862910 207.1.1.332 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_TTSS, LRR_4, LRR_6, LRR_8 0.63 58.0 4.77e-01 100.0% 69.0%
3878393 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.63 47.0 4.15e-01 78.1% 78.8%
5064938 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.63 48.0 4.66e-01 78.9% 100.0%
3752036 207.1.1.28 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_9 0.63 57.0 4.61e-01 99.1% 66.5%
3586148 207.1.1.185 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6 0.62 56.0 4.81e-01 100.0% 70.3%
3629549 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.62 56.0 4.29e-01 100.0% 53.6%
3645056 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.62 56.0 4.93e-01 100.0% 75.7%
5037072 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.62 43.0 4.30e-01 71.9% 80.8%
4947009 2003.1.11.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh_C 0.62 44.0 4.46e-01 73.7% 88.6%
215588 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.60 42.0 4.09e-01 71.1% 73.6%
5031513 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.59 43.0 4.31e-01 74.6% 90.4%
3380288 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.58 47.0 4.35e-01 88.6% 69.3%
4954775 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.58 40.0 4.12e-01 71.1% 83.6%
3365224 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.58 48.0 4.46e-01 89.5% 85.5%