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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00052
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00052
Identity
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-61
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.82 | 44.0 | 4.69e-01 | 98.2% | 60.4% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.80 | 43.0 | 4.67e-01 | 100.0% | 61.7% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 49.0 | 4.61e-01 | 100.0% | 55.2% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.74 | 49.0 | 3.91e-01 | 100.0% | 35.8% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 43.0 | 4.64e-01 | 100.0% | 70.2% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.69 | 38.0 | 3.16e-01 | 92.7% | 28.9% |
| 1x2mA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 45.0 | 4.59e-01 | 100.0% | 68.5% |
| 7ar7E01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.68 | 44.0 | 4.25e-01 | 98.2% | 58.7% |
| 4e4yA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 55.0 | 3.59e-01 | 90.9% | 51.7% |
| 5unlB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 55.0 | 3.54e-01 | 90.9% | 77.1% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 48.0 | 3.54e-01 | 100.0% | 31.6% |
| 7t2rC01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.66 | 43.0 | 4.25e-01 | 98.2% | 63.2% |
| 2rhcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 51.0 | 3.30e-01 | 90.9% | 50.2% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.62 | 40.0 | 4.44e-01 | 100.0% | 87.8% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.61 | 41.0 | 3.72e-01 | 100.0% | 48.8% |
| 1neqA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 40.0 | 3.63e-01 | 100.0% | 51.4% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 39.0 | 3.73e-01 | 100.0% | 54.4% |
| 4hjhA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.59 | 50.0 | 4.02e-01 | 98.2% | 92.2% |
| 6o9aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 51.0 | 3.77e-01 | 100.0% | 80.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.58 | 38.0 | 3.27e-01 | 100.0% | 40.0% |
| 2y1hB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 52.0 | 3.29e-01 | 100.0% | 93.2% |
| 2w3sB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 44.0 | 3.15e-01 | 83.6% | 87.0% |
| 1xwyA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 50.0 | 3.21e-01 | 100.0% | 95.8% |
| 1dgjA04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.54 | 45.0 | 3.32e-01 | 96.4% | 65.8% |
| 3h1qA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 43.0 | 3.57e-01 | 98.2% | 59.1% |
| 3hrdA02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.53 | 48.0 | 3.36e-01 | 100.0% | 55.8% |
| 4lg3A02 | 6.10.20.130 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.53 | 35.0 | 3.89e-01 | 87.3% | 86.0% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.52 | 43.0 | 3.54e-01 | 100.0% | 89.7% |
| 2x26A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 45.0 | 3.13e-01 | 98.2% | 71.4% |
| 1qy9A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 42.0 | 3.13e-01 | 98.2% | 60.7% |
| 2cjlA02 | 3.30.20.10 | Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 | 0.51 | 45.0 | 4.33e-01 | 98.2% | 100.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3886164 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.87 | 47.0 | 4.97e-01 | 100.0% | 60.0% |
| 4165729 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.82 | 48.0 | 3.33e-01 | 96.4% | 20.0% |
| 3507782 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 52.0 | 5.43e-01 | 72.7% | 72.0% |
| 3219209 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 54.0 | 4.89e-01 | 100.0% | 55.7% |
| 3979215 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 53.0 | 5.35e-01 | 100.0% | 70.9% |
| 3259221 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.77 | 51.0 | 5.00e-01 | 100.0% | 63.3% |
| 4995688 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 49.0 | 4.91e-01 | 100.0% | 70.9% |
| 4097425 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.71 | 44.0 | 4.20e-01 | 94.5% | 53.8% |
| 3596050 | 3697.1.1.0 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain | 0.69 | 46.0 | 3.97e-01 | 100.0% | 44.7% |
| 3503529 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 46.0 | 5.25e-01 | 98.2% | 97.5% |
| 5053307 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 49.0 | 4.77e-01 | 100.0% | 71.7% |
| 4501770 | 101.1.1.217 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C | 0.66 | 40.0 | 4.34e-01 | 100.0% | 75.6% |
| 4327653 | 101.1.1.217 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C | 0.65 | 41.0 | 4.46e-01 | 98.2% | 77.8% |
| 4944767 | 101.1.2.883 ↗ | alpha arrays › HTH › HTH › winged helix domain › Radical_SAM | 0.65 | 42.0 | 3.78e-01 | 100.0% | 48.0% |
| 3655985 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.65 | 46.0 | 3.53e-01 | 100.0% | 33.6% |
| 3989416 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 43.0 | 4.84e-01 | 100.0% | 97.5% |
| 4033200 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 42.0 | 4.56e-01 | 94.5% | 82.2% |
| 4117250 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.64 | 55.0 | 5.51e-01 | 100.0% | 92.7% |
| 4999433 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.62 | 40.0 | 4.16e-01 | 100.0% | 72.0% |
| 4522587 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 39.0 | 4.18e-01 | 98.2% | 77.8% |
| 3278726 | 101.1.1.282 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF222 | 0.62 | 48.0 | 3.69e-01 | 100.0% | 37.6% |
| 4970991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 40.0 | 3.07e-01 | 96.4% | 29.6% |
| 4443892 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.61 | 50.0 | 5.08e-01 | 100.0% | 90.9% |
| 4983508 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 39.0 | 3.63e-01 | 100.0% | 51.4% |
| 4175039 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.60 | 51.0 | 5.16e-01 | 100.0% | 92.7% |
| 4104868 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 50.0 | 4.75e-01 | 100.0% | 78.5% |
| 5005640 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 52.0 | 4.88e-01 | 100.0% | 81.5% |
| 4584323 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 49.0 | 4.83e-01 | 100.0% | 86.7% |
| 4947615 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.58 | 53.0 | 5.00e-01 | 100.0% | 86.2% |
| 3399392 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.58 | 47.0 | 4.51e-01 | 100.0% | 76.9% |
| 4982570 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.58 | 52.0 | 4.78e-01 | 100.0% | 80.0% |
| 4163371 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.58 | 49.0 | 4.67e-01 | 100.0% | 80.0% |
| 4369577 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.58 | 49.0 | 4.76e-01 | 100.0% | 86.7% |
| 4944587 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 48.0 | 3.95e-01 | 96.4% | 80.0% |
| 3222238 | 101.1.2.649 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28730 | 0.57 | 45.0 | 4.17e-01 | 100.0% | 67.1% |
| 4929236 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.56 | 50.0 | 4.60e-01 | 100.0% | 80.0% |
| 4970918 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 44.0 | 2.85e-01 | 98.2% | 67.6% |
| 3286577 | 101.1.2.64 ↗ | alpha arrays › HTH › HTH › winged helix domain › Lant_dehydr_N | 0.55 | 46.0 | 3.60e-01 | 92.7% | 69.6% |
| 4008918 | 632.3.1.13 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1615 | 0.53 | 45.0 | 3.99e-01 | 100.0% | 70.6% |
| 3985237 | 144.1.1.9 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › DUF1615 | 0.53 | 45.0 | 3.97e-01 | 100.0% | 70.6% |
| 3409961 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.52 | 34.0 | 3.25e-01 | 96.4% | 54.3% |
| 1779586 | 101.1.2.64 ↗ | alpha arrays › HTH › HTH › winged helix domain › Lant_dehydr_N | 0.52 | 44.0 | 3.50e-01 | 94.5% | 69.4% |
| 5081162 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 44.0 | 3.74e-01 | 96.4% | 60.0% |
| 4146096 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.51 | 34.0 | 3.16e-01 | 96.4% | 50.0% |
| 5042759 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 41.0 | 3.75e-01 | 92.7% | 80.0% |
| 3671031 | 101.1.1.148 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › EPL1 | 0.50 | 40.0 | 3.15e-01 | 100.0% | 37.9% |