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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00053
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00053
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-74
Domain cluster:
rep: OR820515.1__WRQ05482.1__X__00033__D1-81
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.80 | 54.0 | 6.01e-01 | 84.7% | 87.7% |
| 1uw0A01 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.80 | 59.0 | 5.32e-01 | 77.8% | 66.7% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.78 | 55.0 | 4.66e-01 | 93.1% | 46.9% |
| 1v9xA00 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.75 | 61.0 | 5.19e-01 | 87.5% | 87.7% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 42.0 | 3.86e-01 | 83.3% | 46.2% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.68 | 39.0 | 3.05e-01 | 79.2% | 27.0% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.63 | 50.0 | 5.00e-01 | 93.1% | 82.4% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.62 | 37.0 | 3.00e-01 | 76.4% | 30.9% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 50.0 | 4.29e-01 | 91.7% | 70.2% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 48.0 | 4.20e-01 | 87.5% | 100.0% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 48.0 | 4.10e-01 | 90.3% | 94.0% |
| 1wjmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 37.0 | 3.21e-01 | 83.3% | 38.2% |
| 2k50A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 51.0 | 4.47e-01 | 95.8% | 75.0% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 40.0 | 2.82e-01 | 72.2% | 48.3% |
| 2ettA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 47.0 | 3.88e-01 | 88.9% | 82.0% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.57 | 43.0 | 3.38e-01 | 80.6% | 84.1% |
| 3iayA01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 48.0 | 4.32e-01 | 93.1% | 77.6% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 46.0 | 3.93e-01 | 90.3% | 90.5% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 46.0 | 3.85e-01 | 90.3% | 73.3% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 46.0 | 4.03e-01 | 93.1% | 94.6% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.54 | 47.0 | 3.80e-01 | 100.0% | 71.7% |
| 4lxjA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 36.0 | 2.34e-01 | 73.6% | 28.6% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 2.84e-01 | 75.0% | 67.6% |
| 3n4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 43.0 | 3.57e-01 | 91.7% | 61.4% |
| 7oode01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 36.0 | 3.69e-01 | 97.2% | 77.9% |
| 3sluA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.55e-01 | 98.6% | 75.9% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 34.0 | 3.43e-01 | 83.3% | 68.0% |
| 1lv9A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 32.0 | 3.31e-01 | 80.6% | 70.3% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3923898 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.81 | 56.0 | 5.44e-01 | 80.6% | 65.0% |
| 3336718 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.81 | 59.0 | 5.55e-01 | 76.4% | 65.9% |
| 5034811 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.79 | 60.0 | 6.55e-01 | 79.2% | 100.0% |
| 3250863 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.79 | 59.0 | 5.53e-01 | 77.8% | 67.1% |
| 4936660 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.79 | 56.0 | 6.32e-01 | 73.6% | 100.0% |
| 3513068 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.78 | 53.0 | 5.62e-01 | 84.7% | 78.5% |
| 4963795 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 60.0 | 5.97e-01 | 83.3% | 85.3% |
| 5045085 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.75 | 54.0 | 5.23e-01 | 75.0% | 68.8% |
| 3889754 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.75 | 55.0 | 6.03e-01 | 87.5% | 93.3% |
| 3394414 | 376.1.2.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET | 0.74 | 60.0 | 4.63e-01 | 86.1% | 45.3% |
| 3990002 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.73 | 56.0 | 5.27e-01 | 80.6% | 69.4% |
| 3985617 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.69 | 43.0 | 4.37e-01 | 77.8% | 64.3% |
| 4973193 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.68 | 42.0 | 4.06e-01 | 80.6% | 52.9% |
| 4492006 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.68 | 45.0 | 2.97e-01 | 81.9% | 18.1% |
| 3741537 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.67 | 59.0 | 5.10e-01 | 95.8% | 95.5% |
| 3217638 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 42.0 | 4.20e-01 | 81.9% | 61.3% |
| 3995204 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.67 | 47.0 | 4.95e-01 | 80.6% | 81.5% |
| 5039400 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.65 | 46.0 | 3.01e-01 | 83.3% | 18.0% |
| 3573620 | 4.1.1.318 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26085 | 0.62 | 41.0 | 4.39e-01 | 83.3% | 81.7% |
| 3251381 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.60 | 46.0 | 4.83e-01 | 81.9% | 93.8% |
| 5074491 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 50.0 | 4.19e-01 | 91.7% | 64.8% |
| 4975879 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 51.0 | 4.38e-01 | 91.7% | 70.9% |
| 4929019 | 2.1.1.111 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB | 0.60 | 50.0 | 4.56e-01 | 91.7% | 78.9% |
| 3260099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 45.0 | 4.16e-01 | 100.0% | 63.3% |
| 3709649 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.60 | 53.0 | 4.36e-01 | 100.0% | 93.1% |
| 4931879 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.59 | 49.0 | 4.40e-01 | 91.7% | 79.0% |
| 5081844 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 49.0 | 4.12e-01 | 91.7% | 68.3% |
| 5062351 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 49.0 | 4.18e-01 | 91.7% | 70.4% |
| 5066012 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.58 | 49.0 | 4.23e-01 | 91.7% | 73.6% |
| 4942076 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.57 | 47.0 | 4.07e-01 | 91.7% | 72.2% |
| 4930094 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.57 | 48.0 | 4.20e-01 | 91.7% | 73.3% |
| 4948168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 49.0 | 4.24e-01 | 95.8% | 70.9% |
| 4981503 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 47.0 | 4.29e-01 | 91.7% | 82.1% |
| 3436078 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 42.0 | 3.59e-01 | 81.9% | 98.3% |
| 4017879 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.56 | 44.0 | 3.69e-01 | 86.1% | 81.3% |
| 4853066 | 2.1.1.22 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN | 0.55 | 47.0 | 4.10e-01 | 95.8% | 62.8% |
| 5791 | 295.1.1.6 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 | 0.54 | 46.0 | 3.89e-01 | 93.1% | 74.8% |
| 3475881 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 36.0 | 3.73e-01 | 86.1% | 72.9% |
| 3895159 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 37.0 | 3.90e-01 | 86.1% | 88.3% |
| 5066013 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.53 | 43.0 | 3.83e-01 | 91.7% | 70.9% |
| 4468497 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.53 | 41.0 | 3.57e-01 | 81.9% | 76.2% |
| 4012024 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 44.0 | 3.08e-01 | 100.0% | 45.4% |
| 5072529 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.52 | 40.0 | 3.73e-01 | 84.7% | 70.0% |
| 1582440 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.51 | 43.0 | 3.71e-01 | 91.7% | 69.0% |
| 4955607 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.51 | 40.0 | 2.89e-01 | 86.1% | 79.1% |
| 4172287 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.51 | 45.0 | 3.49e-01 | 100.0% | 66.1% |
| 5048982 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 42.0 | 2.97e-01 | 94.4% | 34.5% |
| 4955536 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.50 | 41.0 | 3.10e-01 | 100.0% | 53.6% |
| 3472118 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 39.0 | 3.17e-01 | 84.7% | 80.0% |
| 3716876 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.50 | 41.0 | 2.93e-01 | 100.0% | 56.1% |
| 4951650 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.50 | 42.0 | 2.97e-01 | 100.0% | 57.7% |
| 1233328 | 4.1.1.116 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_14 | 0.50 | 42.0 | 3.45e-01 | 91.7% | 70.0% |
| 5075588 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.50 | 40.0 | 3.73e-01 | 87.5% | 73.3% |