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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00068
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00068
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-78
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3looB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.67 | 47.0 | 3.21e-01 | 74.4% | 45.3% |
| 5n6lA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.66 | 55.0 | 3.88e-01 | 94.9% | 96.7% |
| 3vasA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 46.0 | 3.10e-01 | 74.4% | 45.0% |
| 1ce7A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.63 | 46.0 | 3.62e-01 | 76.9% | 65.4% |
| 3ctkA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.62 | 45.0 | 3.57e-01 | 78.2% | 55.1% |
| 4nqrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 43.0 | 3.47e-01 | 74.4% | 53.5% |
| 3varA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.61 | 51.0 | 3.47e-01 | 96.2% | 78.3% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 45.0 | 4.21e-01 | 80.8% | 86.0% |
| 3ndhA00 | 3.40.600.30 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › | 0.60 | 41.0 | 3.05e-01 | 71.8% | 68.2% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 44.0 | 3.56e-01 | 83.3% | 53.4% |
| 4za3A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.58 | 42.0 | 3.30e-01 | 75.6% | 63.2% |
| 3ktzA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 41.0 | 3.28e-01 | 76.9% | 63.1% |
| 1iftA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 41.0 | 3.22e-01 | 75.6% | 64.9% |
| 1xa6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 43.0 | 3.96e-01 | 82.1% | 86.5% |
| 2mizA00 | 2.60.40.2900 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 38.0 | 3.13e-01 | 70.5% | 45.5% |
| 2uzzA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.56 | 43.0 | 3.31e-01 | 83.3% | 94.8% |
| 1y7eA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 46.0 | 3.23e-01 | 94.9% | 78.3% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 43.0 | 3.75e-01 | 84.6% | 69.8% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.55 | 47.0 | 3.21e-01 | 100.0% | 93.1% |
| 6mtzA01 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.55 | 37.0 | 3.37e-01 | 70.5% | 69.2% |
| 2bjiA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 41.0 | 3.36e-01 | 79.5% | 53.5% |
| 5z1gB01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.54 | 45.0 | 3.30e-01 | 89.7% | 71.1% |
| 1e4eA03 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 38.0 | 3.39e-01 | 75.6% | 67.5% |
| 7uzsX02 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.54 | 45.0 | 3.13e-01 | 97.4% | 85.5% |
| 2bbuA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 42.0 | 3.46e-01 | 91.0% | 76.3% |
| 5hy7B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 39.0 | 2.52e-01 | 82.1% | 86.2% |
| 2azpA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 43.0 | 3.55e-01 | 97.4% | 87.9% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.52 | 44.0 | 3.44e-01 | 98.7% | 82.2% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 39.0 | 2.62e-01 | 84.6% | 78.2% |
| 1wxrA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 41.0 | 2.93e-01 | 92.3% | 94.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.93 | 58.0 | 7.32e-01 | 73.1% | 100.0% |
| 5038690 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 46.0 | 3.66e-01 | 74.4% | 66.3% |
| 4988784 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.65 | 46.0 | 3.81e-01 | 74.4% | 45.7% |
| 3394097 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.64 | 45.0 | 4.12e-01 | 71.8% | 83.0% |
| 4955882 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.60 | 43.0 | 3.71e-01 | 75.6% | 52.3% |
| 3728136 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.60 | 40.0 | 3.59e-01 | 70.5% | 63.5% |
| 4416577 | 2011.1.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M18 | 0.60 | 50.0 | 3.40e-01 | 96.2% | 83.4% |
| 3232669 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.60 | 45.0 | 4.11e-01 | 83.3% | 84.5% |
| 3592440 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.59 | 49.0 | 3.38e-01 | 96.2% | 82.9% |
| 3576812 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.59 | 43.0 | 4.12e-01 | 79.5% | 80.0% |
| None | — | 0.59 | 43.0 | 2.78e-01 | 78.2% | 70.1% | |
| 3510281 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.58 | 40.0 | 2.96e-01 | 71.8% | 45.4% |
| 3512464 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.57 | 45.0 | 4.00e-01 | 92.3% | 59.1% |
| 3700436 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.57 | 46.0 | 3.67e-01 | 88.5% | 91.9% |
| 3286190 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.57 | 39.0 | 3.69e-01 | 73.1% | 93.0% |
| 3263598 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.56 | 41.0 | 3.30e-01 | 76.9% | 99.3% |
| 3253803 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.55 | 42.0 | 4.06e-01 | 83.3% | 88.9% |
| 3290171 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 40.0 | 3.50e-01 | 76.9% | 98.3% |
| 3502259 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.55 | 47.0 | 4.06e-01 | 97.4% | 66.4% |
| 3506773 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.55 | 44.0 | 3.92e-01 | 93.6% | 59.2% |
| 3508125 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.55 | 44.0 | 3.96e-01 | 94.9% | 63.6% |
| 3222243 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.55 | 40.0 | 3.34e-01 | 79.5% | 53.1% |
| 3654105 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.54 | 45.0 | 3.19e-01 | 92.3% | 43.9% |
| 4480171 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.54 | 39.0 | 3.70e-01 | 75.6% | 84.2% |
| 6659 | 4350.1.1.1 ↗ | a+b two layers › PG1388-like › PG1388-like › PG1388-like › DUF3256 | 0.54 | 41.0 | 3.18e-01 | 85.9% | 73.6% |
| 3212241 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 44.0 | 3.88e-01 | 92.3% | 62.5% |
| 3515938 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.54 | 42.0 | 3.86e-01 | 94.9% | 62.7% |
| 3219023 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.53 | 43.0 | 4.06e-01 | 92.3% | 75.0% |