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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00071
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00071
Identity
- Kingdom:
- phage
Quality
56.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 72-164
Domain cluster:
rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00077__D38-124
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.71 | 50.0 | 4.24e-01 | 74.2% | 78.8% |
| 2l1lB00 | 1.20.1440.250 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.67 | 50.0 | 4.54e-01 | 79.6% | 82.7% |
| 4ewcA03 | 1.20.120.1660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.65 | 43.0 | 4.76e-01 | 100.0% | 85.3% |
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.65 | 31.0 | 3.31e-01 | 100.0% | 51.2% |
| 3vldA01 | 1.25.10.50 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.62 | 44.0 | 3.13e-01 | 75.3% | 41.8% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 42.0 | 4.42e-01 | 89.2% | 78.6% |
| 2rq1A00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.60 | 48.0 | 4.63e-01 | 89.2% | 89.9% |
| 3mzoB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.59 | 41.0 | 3.15e-01 | 71.0% | 86.7% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 41.0 | 3.91e-01 | 75.3% | 86.8% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 36.0 | 3.72e-01 | 97.8% | 67.1% |
| 4kh7B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 42.0 | 3.94e-01 | 77.4% | 89.8% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 45.0 | 4.76e-01 | 100.0% | 100.0% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 51.0 | 4.75e-01 | 100.0% | 92.4% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 51.0 | 4.65e-01 | 100.0% | 88.7% |
| 1dowA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 50.0 | 3.86e-01 | 96.8% | 56.6% |
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 41.0 | 4.02e-01 | 77.4% | 86.7% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 50.0 | 4.55e-01 | 100.0% | 94.5% |
| 4iggB02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 51.0 | 4.66e-01 | 100.0% | 93.4% |
| 4iggB06 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 49.0 | 3.80e-01 | 100.0% | 57.7% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.56 | 50.0 | 4.31e-01 | 100.0% | 86.2% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 40.0 | 3.78e-01 | 78.5% | 90.8% |
| 3lvyE01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 39.0 | 3.25e-01 | 75.3% | 86.7% |
| 2r8wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 43.0 | 3.06e-01 | 86.0% | 95.3% |
| 1c1kA02 | 1.10.220.50 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain | 0.54 | 45.0 | 4.24e-01 | 93.5% | 84.3% |
| 2qnlA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.54 | 43.0 | 3.66e-01 | 89.2% | 90.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 43.0 | 4.00e-01 | 87.1% | 75.4% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.52 | 45.0 | 3.97e-01 | 100.0% | 83.6% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.51 | 39.0 | 4.23e-01 | 98.9% | 100.0% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 44.0 | 4.05e-01 | 100.0% | 93.1% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 36.0 | 2.88e-01 | 73.1% | 86.3% |
| 3qdkA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 39.0 | 2.90e-01 | 84.9% | 61.3% |
| 3nb2A02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.51 | 38.0 | 3.33e-01 | 82.8% | 65.8% |
| 2nrjA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.51 | 44.0 | 3.09e-01 | 100.0% | 67.3% |
| 2c0gA02 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.50 | 41.0 | 3.97e-01 | 89.2% | 86.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3706764 | 109.4.1.226 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind | 0.72 | 52.0 | 4.29e-01 | 75.3% | 72.1% |
| 5059607 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 49.0 | 4.17e-01 | 74.2% | 64.0% |
| 3526729 | 109.6.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N | 0.65 | 49.0 | 3.99e-01 | 79.6% | 70.3% |
| 3996743 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 52.0 | 4.16e-01 | 88.2% | 57.9% |
| 5050223 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 47.0 | 3.54e-01 | 78.5% | 52.7% |
| 3626726 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 51.0 | 3.95e-01 | 88.2% | 62.3% |
| 3390488 | 109.4.1.937 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EDRF1 | 0.62 | 47.0 | 3.48e-01 | 80.6% | 71.4% |
| 3253935 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.60 | 55.0 | 5.01e-01 | 98.9% | 98.3% |
| 5051495 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.60 | 52.0 | 5.25e-01 | 100.0% | 93.7% |
| 3257258 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 43.0 | 4.36e-01 | 77.4% | 83.2% |
| 3510392 | 6157.1.1.1 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP | 0.59 | 48.0 | 4.58e-01 | 87.1% | 87.3% |
| 3392701 | 1128.1.1.3 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › UQCC2_CBP6 | 0.59 | 38.0 | 4.31e-01 | 88.2% | 87.1% |
| 3586715 | 3736.1.1.0 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 | 0.59 | 50.0 | 3.89e-01 | 95.7% | 63.7% |
| 3905315 | 109.24.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_C | 0.59 | 41.0 | 3.68e-01 | 73.1% | 90.4% |
| 4182665 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.56 | 50.0 | 4.22e-01 | 100.0% | 68.8% |
| 3253930 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 50.0 | 4.61e-01 | 100.0% | 100.0% |
| 3551282 | 109.54.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp13 | 0.56 | 41.0 | 3.52e-01 | 79.6% | 59.4% |
| 3533053 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.56 | 46.0 | 4.32e-01 | 90.3% | 93.0% |
| 3966605 | 601.4.1.84 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › KinB_sensor | 0.56 | 50.0 | 4.61e-01 | 100.0% | 86.7% |
| 3253932 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 49.0 | 4.49e-01 | 100.0% | 99.2% |
| 3498944 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.56 | 49.0 | 4.19e-01 | 100.0% | 76.8% |
| 3230375 | 109.4.1.1367 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26723 | 0.55 | 45.0 | 3.21e-01 | 95.7% | 60.6% |
| 4959394 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.54 | 50.0 | 3.79e-01 | 100.0% | 61.0% |
| 3797268 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.54 | 48.0 | 4.14e-01 | 100.0% | 80.0% |
| 3314571 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.54 | 40.0 | 2.67e-01 | 79.6% | 23.8% |
| 3471868 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.54 | 38.0 | 3.65e-01 | 76.3% | 87.8% |
| 3201694 | 192.29.1.52 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Anthrone_oxy | 0.53 | 47.0 | 3.87e-01 | 100.0% | 85.0% |
| 3623206 | 3567.1.1.10 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › MEIOC | 0.53 | 47.0 | 3.78e-01 | 98.9% | 74.6% |
| 3741521 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.52 | 45.0 | 4.15e-01 | 100.0% | 92.8% |
| 3768253 | 168.1.1.1 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 | 0.52 | 40.0 | 3.27e-01 | 84.9% | 80.0% |
| 4955005 | 7583.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom | 0.52 | 45.0 | 3.54e-01 | 98.9% | 81.9% |
| 3499293 | 309.1.1.13 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C,M16C_assoc | 0.52 | 40.0 | 2.47e-01 | 84.9% | 52.1% |
| 3517467 | 6157.1.1.0 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 | 0.52 | 43.0 | 4.04e-01 | 92.5% | 89.6% |
| 169889 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.52 | 38.0 | 3.58e-01 | 89.2% | 64.0% |
| 3803072 | 601.1.1.93 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1216 | 0.51 | 43.0 | 3.69e-01 | 95.7% | 91.3% |
| 4975992 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 43.0 | 4.28e-01 | 92.5% | 100.0% |
D2
medium
residues 344-407