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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00095
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00095
Identity
- Kingdom:
- phage
Quality
51.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-63
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3us4A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 49.0 | 4.06e-01 | 100.0% | 47.4% |
| 2ablA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 49.0 | 4.07e-01 | 100.0% | 47.4% |
| 1xa6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 46.0 | 3.78e-01 | 100.0% | 43.3% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 47.0 | 3.93e-01 | 100.0% | 47.0% |
| 2dx0A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 48.0 | 3.78e-01 | 100.0% | 45.3% |
| 1ztuA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 45.0 | 3.33e-01 | 93.9% | 30.5% |
| 1rjaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 46.0 | 3.87e-01 | 100.0% | 60.0% |
| 2knoA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 46.0 | 3.73e-01 | 100.0% | 55.5% |
| 2dlcX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.56 | 42.0 | 3.23e-01 | 85.7% | 48.4% |
| 1io1A01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.54 | 44.0 | 3.12e-01 | 95.9% | 81.7% |
| 1rjtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 36.0 | 3.24e-01 | 71.4% | 45.2% |
| 4nx9A01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.54 | 42.0 | 3.16e-01 | 95.9% | 86.5% |
| 1peaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 41.0 | 2.99e-01 | 100.0% | 26.1% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 39.0 | 3.79e-01 | 83.7% | 91.2% |
| 3hutA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 42.0 | 3.07e-01 | 100.0% | 30.7% |
| 2kksA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 40.0 | 3.10e-01 | 95.9% | 81.5% |
| 2fkcA01 | 3.40.1350.40 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 39.0 | 3.13e-01 | 85.7% | 76.4% |
| 3wihA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.37e-01 | 87.8% | 61.4% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.12e-01 | 81.6% | 51.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3947985 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.64 | 51.0 | 4.70e-01 | 100.0% | 67.1% |
| 5028865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 44.0 | 4.38e-01 | 73.5% | 92.0% |
| 3683585 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.62 | 50.0 | 4.02e-01 | 91.8% | 91.0% |
| 168516 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 46.0 | 3.48e-01 | 100.0% | 31.2% |
| 3801699 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.60 | 46.0 | 3.77e-01 | 100.0% | 41.8% |
| 158506 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 47.0 | 3.73e-01 | 100.0% | 45.6% |
| 165182 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.57 | 47.0 | 3.36e-01 | 100.0% | 58.3% |
| 3730216 | 1.1.9.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 | 0.56 | 47.0 | 3.97e-01 | 100.0% | 86.7% |
| 3247002 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.55 | 42.0 | 3.48e-01 | 100.0% | 42.7% |
| 2647598 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.54 | 37.0 | 2.59e-01 | 79.6% | 19.8% |
| 3417774 | 1.1.9.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Dev_Cell_Death | 0.54 | 42.0 | 3.35e-01 | 100.0% | 57.8% |
| 4796282 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.54 | 43.0 | 3.51e-01 | 100.0% | 50.5% |
| 3334875 | 2007.1.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI | 0.53 | 37.0 | 2.64e-01 | 79.6% | 31.3% |
| 3203069 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 35.0 | 2.25e-01 | 73.5% | 11.6% |
| 4981303 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.51 | 38.0 | 3.73e-01 | 85.7% | 76.4% |
| 4561058 | 1185.1.1.2 ↗ | a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › Imm1 | 0.51 | 40.0 | 3.25e-01 | 98.0% | 88.7% |
| 3938726 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 38.0 | 3.23e-01 | 100.0% | 43.8% |
D2
high
residues 76-205