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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00096
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00096
Identity
- Kingdom:
- phage
Quality
47.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-48
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6iy8A01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.88 | 62.0 | 3.84e-01 | 100.0% | 15.3% |
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.83 | 57.0 | 4.01e-01 | 71.8% | 64.9% |
| 6bfnB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.75 | 57.0 | 3.56e-01 | 94.9% | 15.8% |
| 2yo2A02 | 6.10.250.2030 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 64.0 | 5.45e-01 | 100.0% | 61.7% |
| 1q8rA00 | 3.30.1330.70 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA | 0.72 | 49.0 | 3.44e-01 | 79.5% | 23.7% |
| 2itaA01 | 1.20.5.920 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › rhodobacter sphaeroides pufx membrane protein | 0.69 | 50.0 | 4.46e-01 | 97.4% | 55.4% |
| 3ar4A04 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.65 | 49.0 | 3.00e-01 | 82.1% | 13.9% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.63 | 46.0 | 3.03e-01 | 79.5% | 19.5% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 41.0 | 3.70e-01 | 74.4% | 59.3% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.58 | 44.0 | 3.12e-01 | 92.3% | 25.2% |
| 2a90A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 38.0 | 2.78e-01 | 71.8% | 32.7% |
| 7oslA02 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.56 | 44.0 | 3.19e-01 | 79.5% | 32.0% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 37.0 | 2.22e-01 | 71.8% | 10.0% |
| 1i72A00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.53 | 40.0 | 2.48e-01 | 87.2% | 100.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959827 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.72 | 54.0 | 3.32e-01 | 94.9% | 13.4% |
| 3604536 | 2003.1.1.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 | 0.69 | 47.0 | 3.14e-01 | 71.8% | 32.0% |
| 3637672 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 41.0 | 3.97e-01 | 74.4% | 53.3% |
| 3960493 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.58 | 46.0 | 3.21e-01 | 87.2% | 27.2% |
| 4122386 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.54 | 46.0 | 3.63e-01 | 97.4% | 71.0% |
D2
high
residues 54-110
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qqkA02 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.61 | 49.0 | 4.09e-01 | 96.5% | 89.6% |
| 1ig3A01 | 2.60.120.320 | Mainly Beta › Sandwich › Jelly Rolls › Thiamin pyrophosphokinase, thiamin-binding domain | 0.61 | 47.0 | 4.17e-01 | 94.7% | 92.8% |
| 1f56A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.60 | 49.0 | 4.31e-01 | 96.5% | 94.5% |
ECOD (2)
D3
medium
residues 366-493
D4
medium
residues 494-547