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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00100

Bact-Vir

SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00100

Identity

Kingdom:
phage

Quality

58.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-141
PDB
Domain cluster: rep: MW824397.1__QZI91684.1__PODOV088v1_p0023__00023__D41-137
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.61 43.0 4.96e-01 75.3% 100.0%
1k3rA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 39.0 4.49e-01 78.8% 98.3%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 4.50e-01 82.4% 93.1%
4b9wA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 43.0 4.03e-01 80.0% 72.2%
4jpbW02 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.58 42.0 4.40e-01 76.5% 84.8%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.82e-01 75.3% 77.1%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 38.0 3.99e-01 75.3% 75.6%
2qdlA02 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.56 41.0 4.14e-01 75.3% 79.5%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 4.09e-01 74.1% 79.7%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.55 38.0 3.74e-01 70.6% 89.9%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 4.17e-01 85.9% 89.8%
6lbrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 49.0 3.74e-01 100.0% 64.5%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.55 33.0 3.27e-01 94.1% 55.4%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 4.17e-01 75.3% 97.1%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 4.06e-01 74.1% 94.5%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.54 38.0 4.27e-01 76.5% 98.5%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 4.11e-01 72.9% 95.5%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 4.05e-01 80.0% 95.4%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 4.22e-01 81.2% 100.0%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.54 35.0 3.37e-01 92.9% 58.8%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.58e-01 100.0% 97.8%
4fchA01 2.60.40.3620 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 4.18e-01 98.8% 87.2%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 4.03e-01 72.9% 95.4%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.84e-01 74.1% 92.2%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 42.0 3.25e-01 94.1% 78.9%
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 42.0 3.24e-01 94.1% 66.1%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.64e-01 75.3% 97.7%
1nlrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 42.0 3.28e-01 96.5% 82.4%
1kxlA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 45.0 3.53e-01 100.0% 69.0%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.93e-01 74.1% 100.0%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 44.0 3.81e-01 100.0% 85.8%
4qakA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.51 36.0 2.87e-01 75.3% 95.9%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 4.12e-01 100.0% 80.6%
4mqdA00 2.60.34.30 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Competence, DNA-entry nuclease inhibitor, ComJ 0.50 44.0 3.78e-01 96.5% 84.2%
6voxA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 42.0 3.90e-01 96.5% 89.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065332 2.1.1.21 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.65 48.0 5.12e-01 84.7% 89.3%
4985588 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 58.0 5.01e-01 100.0% 92.5%
3970756 2.10.1.0 ↗ beta barrels › OB-fold › CheW › CheW 0.64 46.0 3.72e-01 76.5% 47.3%
5016329 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.63 46.0 5.01e-01 75.3% 92.9%
4646733 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.63 44.0 4.20e-01 72.9% 97.0%
4949046 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.63 46.0 3.88e-01 76.5% 49.6%
3419133 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.62 45.0 4.09e-01 76.5% 85.2%
3389706 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 44.0 4.47e-01 75.3% 98.8%
4994005 2.1.1.21 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.62 41.0 4.56e-01 78.8% 89.2%
5004480 2.1.1.364 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110 0.62 46.0 4.76e-01 80.0% 93.8%
4482101 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.61 45.0 3.83e-01 76.5% 48.1%
4970996 2.1.1.21 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.61 47.0 4.81e-01 84.7% 86.3%
5041484 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.61 44.0 3.78e-01 76.5% 51.1%
4975253 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 4.73e-01 84.7% 89.4%
5007113 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.60 43.0 3.74e-01 76.5% 49.2%
4931880 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 42.0 4.58e-01 100.0% 91.4%
369 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 4.45e-01 84.7% 87.3%
5038808 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.59 43.0 3.67e-01 76.5% 50.4%
5030571 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 43.0 4.55e-01 84.7% 88.0%
4586546 259.1.1.2 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.59 45.0 4.41e-01 81.2% 98.9%
3626692 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 4.68e-01 85.9% 93.3%
4399948 2.1.1.115 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PabTrmU54_TRAM_dom 0.56 35.0 3.93e-01 77.6% 86.7%
4930895 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 4.58e-01 100.0% 91.3%
3714149 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 3.76e-01 81.2% 75.0%
4676584 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.55 37.0 4.08e-01 80.0% 90.8%
5013366 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 47.0 4.22e-01 100.0% 69.2%
5070441 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 4.39e-01 84.7% 100.0%
137757 4312.1.1.9 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › MqsR_toxin 0.54 35.0 3.37e-01 92.9% 58.8%
5012552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 4.19e-01 100.0% 79.0%
4599661 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.53 38.0 2.45e-01 76.5% 64.3%
3289334 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.53 46.0 3.42e-01 100.0% 86.0%
4960276 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 45.0 4.50e-01 100.0% 92.2%
4528707 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 46.0 4.28e-01 100.0% 85.5%
3806930 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 47.0 4.46e-01 100.0% 90.0%
4323154 2.1.1.341 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 0.52 45.0 4.10e-01 100.0% 72.2%
3251735 2.1.1.137 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF6748 0.51 36.0 3.57e-01 74.1% 96.7%
4002116 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 44.0 3.80e-01 100.0% 69.7%
4567919 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.51 44.0 4.04e-01 96.5% 90.0%
5062579 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 4.26e-01 100.0% 98.7%
3105016 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 44.0 3.53e-01 100.0% 69.5%
D2 medium residues 1-51
PDB