←Back to structures
SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00124
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00124
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-201
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.77 | 60.0 | 6.04e-01 | 100.0% | 80.8% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.76 | 61.0 | 6.13e-01 | 100.0% | 83.1% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.73 | 59.0 | 6.09e-01 | 100.0% | 89.3% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.71 | 56.0 | 5.95e-01 | 100.0% | 93.4% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 63.0 | 6.28e-01 | 100.0% | 91.4% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 56.0 | 5.84e-01 | 100.0% | 89.1% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 43.0 | 4.76e-01 | 100.0% | 79.8% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.65 | 35.0 | 4.46e-01 | 98.1% | 86.5% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.62 | 36.0 | 4.39e-01 | 96.8% | 88.9% |
| 3ne5C02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.62 | 35.0 | 4.18e-01 | 91.8% | 83.3% |
| 1t0pB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 27.0 | 3.51e-01 | 81.6% | 73.3% |
| 1lvbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 31.0 | 3.61e-01 | 97.5% | 69.4% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 43.0 | 4.50e-01 | 100.0% | 81.0% |
| 3qt2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 33.0 | 3.87e-01 | 88.6% | 76.1% |
| 3ct9A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 29.0 | 3.47e-01 | 89.9% | 70.1% |
| 2j5aA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 30.0 | 3.55e-01 | 90.5% | 72.6% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 28.0 | 3.53e-01 | 83.5% | 77.7% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 29.0 | 3.90e-01 | 81.0% | 100.0% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 31.0 | 3.70e-01 | 89.2% | 85.3% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.53 | 41.0 | 4.42e-01 | 99.4% | 95.6% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.53 | 27.0 | 3.53e-01 | 97.5% | 88.4% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 29.0 | 3.33e-01 | 90.5% | 75.0% |
| 1vmbA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 30.0 | 3.51e-01 | 89.9% | 81.3% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 33.0 | 4.03e-01 | 92.4% | 100.0% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 28.0 | 3.22e-01 | 90.5% | 69.0% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.51 | 26.0 | 2.76e-01 | 82.3% | 51.0% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 29.0 | 3.45e-01 | 91.8% | 85.1% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 26.0 | 2.82e-01 | 78.5% | 55.0% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.50 | 29.0 | 3.59e-01 | 97.5% | 93.5% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.98 | 84.0 | 8.56e-01 | 100.0% | 89.7% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.93 | 82.0 | 8.13e-01 | 98.7% | 87.7% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.92 | 83.0 | 8.60e-01 | 100.0% | 98.0% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.91 | 73.0 | 7.51e-01 | 100.0% | 86.6% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.91 | 73.0 | 7.65e-01 | 100.0% | 89.7% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.90 | 73.0 | 7.70e-01 | 100.0% | 92.3% |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.88 | 70.0 | 7.68e-01 | 100.0% | 99.2% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.87 | 72.0 | 7.48e-01 | 100.0% | 91.3% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.85 | 73.0 | 7.50e-01 | 100.0% | 92.8% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.84 | 61.0 | 4.98e-01 | 99.4% | 43.3% |
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.84 | 56.0 | 6.55e-01 | 100.0% | 93.0% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.84 | 64.0 | 6.84e-01 | 100.0% | 89.3% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.82 | 58.0 | 6.43e-01 | 100.0% | 89.8% |
| 3096576 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.81 | 69.0 | 6.92e-01 | 100.0% | 86.8% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.81 | 62.0 | 6.78e-01 | 99.4% | 96.2% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.80 | 63.0 | 6.24e-01 | 100.0% | 78.2% |
| 3944178 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.79 | 54.0 | 6.32e-01 | 98.1% | 95.7% |
| 2101633 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.79 | 62.0 | 6.10e-01 | 100.0% | 76.6% |
| 5082881 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.79 | 61.0 | 6.76e-01 | 99.4% | 100.0% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.78 | 62.0 | 6.26e-01 | 100.0% | 83.2% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.78 | 62.0 | 6.24e-01 | 100.0% | 81.9% |
| 80 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.76 | 61.0 | 6.08e-01 | 100.0% | 81.2% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.76 | 63.0 | 6.28e-01 | 100.0% | 84.4% |
| 4988100 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.76 | 57.0 | 6.40e-01 | 100.0% | 99.2% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.76 | 61.0 | 6.13e-01 | 100.0% | 83.1% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.74 | 59.0 | 4.88e-01 | 100.0% | 48.9% |
| 1124583 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.73 | 59.0 | 6.09e-01 | 100.0% | 89.3% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.73 | 60.0 | 6.07e-01 | 100.0% | 86.5% |
| 4954551 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 54.0 | 5.85e-01 | 100.0% | 89.6% |
| 3942477 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.72 | 61.0 | 6.09e-01 | 100.0% | 86.5% |
| 1444177 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 55.0 | 5.91e-01 | 99.4% | 92.6% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.72 | 51.0 | 5.78e-01 | 97.5% | 99.1% |
| 3059162 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.71 | 52.0 | 5.76e-01 | 97.5% | 95.2% |
| 1117606 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.71 | 57.0 | 6.15e-01 | 97.5% | 98.5% |
| 4888732 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.70 | 55.0 | 5.60e-01 | 100.0% | 82.7% |
| 136185 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.70 | 63.0 | 6.28e-01 | 100.0% | 91.4% |
| 4954561 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 57.0 | 6.15e-01 | 100.0% | 100.0% |
| 3590380 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 61.0 | 5.88e-01 | 100.0% | 83.3% |
| 184986 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.69 | 52.0 | 5.76e-01 | 98.7% | 99.2% |
| 3966479 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 62.0 | 6.12e-01 | 100.0% | 90.9% |
| 4033579 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.69 | 52.0 | 5.81e-01 | 96.2% | 100.0% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.69 | 55.0 | 5.96e-01 | 97.5% | 100.0% |
| 4032562 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.68 | 53.0 | 5.79e-01 | 97.5% | 98.5% |
| 3964955 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 64.0 | 6.37e-01 | 100.0% | 98.1% |
| 2097771 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.68 | 61.0 | 5.99e-01 | 100.0% | 88.8% |
| 4952429 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 42.0 | 5.10e-01 | 97.5% | 98.0% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 54.0 | 5.74e-01 | 84.8% | 98.6% |
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.66 | 53.0 | 5.71e-01 | 95.6% | 100.0% |
| 3943681 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.64 | 56.0 | 5.77e-01 | 98.1% | 97.3% |
| 4030848 | 1.1.13.52 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_1 | 0.62 | 55.0 | 5.51e-01 | 100.0% | 91.4% |
| 4996340 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.62 | 28.0 | 3.80e-01 | 83.5% | 81.2% |
| 5012991 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.59 | 37.0 | 4.15e-01 | 97.5% | 81.7% |
| 3921684 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.57 | 32.0 | 3.00e-01 | 84.2% | 44.4% |
| 3183073 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.55 | 47.0 | 3.88e-01 | 100.0% | 52.6% |
| 3966645 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.53 | 39.0 | 4.30e-01 | 97.5% | 95.2% |
| 4309280 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.53 | 34.0 | 3.69e-01 | 82.3% | 75.6% |
| 4968263 | 1.1.5.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C | 0.52 | 43.0 | 3.85e-01 | 100.0% | 63.6% |
| 3478734 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 4.17e-01 | 81.0% | 97.5% |
| 5022735 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.51 | 25.0 | 2.99e-01 | 98.7% | 69.0% |