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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00128

Bact-Vir

SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00128

Identity

Kingdom:
phage

Quality

67.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 355-431
PDB
D2 medium residues 2-134
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 18.0 2.48e-01 89.5% 56.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.50 25.0 3.46e-01 77.4% 96.9%
D3 medium residues 135-168_192-212_243-284_331-353
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 30.0 3.92e-01 78.3% 98.4%
5e9aB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 28.0 3.58e-01 78.3% 96.8%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 32.0 3.67e-01 79.2% 87.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3454649 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.53 42.0 3.43e-01 85.8% 84.3%
3875477 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.51 41.0 3.37e-01 86.7% 80.9%