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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00134
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00134
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-116
Domain cluster:
rep: LC168164.1__BAX25562.1__BPT24_244__00240__D16-115
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.86 | 75.0 | 7.68e-01 | 92.2% | 93.7% |
| 4hrzB00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.86 | 71.0 | 6.97e-01 | 86.1% | 81.3% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 34.0 | 4.43e-01 | 99.1% | 84.6% |
| 4dkaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 27.0 | 3.12e-01 | 97.4% | 47.7% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 34.0 | 4.39e-01 | 99.1% | 85.5% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 33.0 | 3.96e-01 | 100.0% | 76.0% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.60 | 29.0 | 2.99e-01 | 80.0% | 45.5% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.59 | 47.0 | 4.75e-01 | 87.0% | 83.6% |
| 1ni9A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 47.0 | 4.33e-01 | 85.2% | 70.9% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 36.0 | 3.39e-01 | 85.2% | 50.3% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 45.0 | 3.98e-01 | 95.7% | 60.0% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.55 | 39.0 | 3.65e-01 | 99.1% | 58.2% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.54 | 37.0 | 3.89e-01 | 73.0% | 76.9% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.54 | 33.0 | 3.47e-01 | 80.9% | 66.0% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 28.0 | 3.37e-01 | 78.3% | 76.0% |
| 4mz2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 32.0 | 3.24e-01 | 99.1% | 60.4% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 29.0 | 3.27e-01 | 75.7% | 70.6% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.51 | 40.0 | 3.20e-01 | 86.1% | 71.8% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 42.0 | 3.49e-01 | 96.5% | 50.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948020 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.92 | 83.0 | 8.56e-01 | 100.0% | 98.2% |
| 3965272 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.91 | 81.0 | 8.46e-01 | 96.5% | 100.0% |
| 3966072 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.91 | 81.0 | 8.38e-01 | 100.0% | 98.1% |
| 3981113 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.90 | 81.0 | 8.31e-01 | 100.0% | 98.2% |
| 5004672 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.90 | 87.0 | 8.54e-01 | 100.0% | 97.5% |
| 2589713 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.86 | 74.0 | 7.24e-01 | 90.4% | 84.8% |
| 2907089 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.86 | 66.0 | 6.72e-01 | 79.1% | 85.7% |
| 4888824 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.85 | 75.0 | 7.29e-01 | 93.0% | 86.4% |
| 4988107 | 283.2.1.9 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator | 0.83 | 66.0 | 6.77e-01 | 86.1% | 86.4% |
| 4957572 | 283.2.1.9 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator | 0.82 | 78.0 | 7.31e-01 | 100.0% | 98.5% |
| 4953347 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.79 | 32.0 | 4.95e-01 | 99.1% | 90.0% |
| 4995812 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.78 | 63.0 | 6.72e-01 | 84.3% | 97.0% |
| 4433785 | 283.2.1.4 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GP46 | 0.78 | 73.0 | 6.97e-01 | 100.0% | 100.0% |
| 4140244 | 283.2.1.9 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator | 0.77 | 70.0 | 7.06e-01 | 99.1% | 98.3% |
| 3960657 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 29.0 | 3.60e-01 | 84.3% | 53.3% |
| 3941521 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.75 | 69.0 | 6.96e-01 | 98.3% | 100.0% |
| 5035327 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 28.0 | 3.23e-01 | 86.1% | 45.9% |
| 3228051 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.69 | 25.0 | 3.28e-01 | 80.9% | 56.9% |
| 3279407 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 31.0 | 3.25e-01 | 97.4% | 44.5% |
| 3643549 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.69 | 35.0 | 4.23e-01 | 78.3% | 72.5% |
| 3483489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 35.0 | 4.34e-01 | 78.3% | 77.3% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.68 | 36.0 | 4.57e-01 | 100.0% | 85.7% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.64 | 35.0 | 4.34e-01 | 99.1% | 84.0% |
| 5073192 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 33.0 | 4.26e-01 | 76.5% | 92.3% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 29.0 | 4.11e-01 | 99.1% | 98.2% |
| 3966821 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.59 | 33.0 | 4.17e-01 | 85.2% | 100.0% |
| 4204465 | 881.1.1.36 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF25844 | 0.59 | 40.0 | 3.83e-01 | 98.3% | 59.3% |
| 5054994 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 23.0 | 3.37e-01 | 84.3% | 83.3% |
| 3303563 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.57 | 44.0 | 3.96e-01 | 99.1% | 58.1% |
| 3936702 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 46.0 | 4.23e-01 | 86.1% | 76.7% |
| 4942807 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.56 | 26.0 | 3.38e-01 | 99.1% | 79.7% |
| 4553924 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.56 | 46.0 | 3.27e-01 | 90.4% | 59.7% |
| 4658924 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.55 | 45.0 | 3.26e-01 | 90.4% | 60.1% |
| 4045276 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 44.0 | 3.18e-01 | 89.6% | 59.4% |
| 5066760 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.54 | 40.0 | 3.95e-01 | 78.3% | 74.2% |
| 3289254 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.53 | 31.0 | 3.44e-01 | 96.5% | 71.6% |
| 5060691 | 4018.1.1.3 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase_glpX | 0.52 | 47.0 | 4.19e-01 | 100.0% | 75.8% |
| 4998404 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 24.0 | 3.31e-01 | 85.2% | 86.7% |
| 5052708 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.50 | 44.0 | 3.55e-01 | 96.5% | 93.4% |