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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00141
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00141
Identity
- Kingdom:
- phage
Quality
81.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-127
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.74 | 48.0 | 5.70e-01 | 70.9% | 97.6% |
| 1xfiA02 | 1.20.1700.10 | Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like | 0.62 | 37.0 | 4.26e-01 | 72.4% | 83.3% |
| 3c07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 50.0 | 4.30e-01 | 92.1% | 71.0% |
| 5c4yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 43.0 | 4.25e-01 | 79.5% | 94.1% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.57 | 29.0 | 3.40e-01 | 73.2% | 68.2% |
| 6fmhB01 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.53 | 44.0 | 3.94e-01 | 87.4% | 100.0% |
| 6c1qB02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 48.0 | 3.72e-01 | 100.0% | 56.3% |
| 2pz9A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 41.0 | 3.66e-01 | 83.5% | 70.4% |
| 2lnlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 46.0 | 3.55e-01 | 99.2% | 52.7% |
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.51 | 40.0 | 3.26e-01 | 82.7% | 74.8% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.50 | 41.0 | 2.94e-01 | 85.8% | 72.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4570076 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.74 | 60.0 | 4.64e-01 | 100.0% | 39.6% |
| 4053923 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.74 | 58.0 | 6.26e-01 | 96.1% | 100.0% |
| 4624390 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.74 | 58.0 | 6.04e-01 | 95.3% | 91.3% |
| 3972284 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.73 | 58.0 | 6.03e-01 | 95.3% | 91.3% |
| 3090120 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.73 | 60.0 | 6.22e-01 | 100.0% | 94.1% |
| None | — | 0.69 | 62.0 | 5.83e-01 | 96.9% | 97.3% | |
| 140810 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.68 | 62.0 | 5.48e-01 | 97.6% | 98.9% |
| None | — | 0.64 | 58.0 | 5.32e-01 | 99.2% | 89.1% | |
| 3605672 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 43.0 | 3.54e-01 | 79.5% | 43.1% |
| 4060154 | 4974.1.1.0 ↗ | alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain | 0.58 | 45.0 | 3.99e-01 | 83.5% | 62.1% |
| 3788025 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 46.0 | 4.01e-01 | 97.6% | 55.5% |
| 3466405 | 1075.1.2.12 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › EMP70 | 0.56 | 39.0 | 3.59e-01 | 72.4% | 67.1% |
| 3293516 | 4953.1.1.23 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › YIF1 | 0.55 | 40.0 | 3.52e-01 | 77.2% | 52.0% |
| 3774605 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 44.0 | 3.95e-01 | 88.2% | 98.9% |
| 4030740 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 39.0 | 4.07e-01 | 75.6% | 90.4% |
| 3226789 | 5001.1.1.62 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YIF1 | 0.53 | 40.0 | 3.48e-01 | 79.5% | 53.7% |
| 3413892 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.52 | 41.0 | 4.24e-01 | 96.9% | 91.7% |
D2
high
residues 162-273
Domain cluster:
rep: PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00129__D1-84
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 32.0 | 4.91e-01 | 73.2% | 97.9% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 32.0 | 4.81e-01 | 72.3% | 100.0% |
| 1o4xA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 34.0 | 4.80e-01 | 74.1% | 96.3% |
| 1u2wD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 41.0 | 4.41e-01 | 90.2% | 68.1% |
| 1le8A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 32.0 | 4.43e-01 | 71.4% | 94.3% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 33.0 | 4.12e-01 | 75.0% | 77.9% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 36.0 | 4.47e-01 | 85.7% | 87.3% |
| 2ecbA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 32.0 | 4.32e-01 | 79.5% | 100.0% |
| 2mw8A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 35.0 | 4.32e-01 | 76.8% | 89.6% |
| 1jhgA00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.61 | 35.0 | 3.68e-01 | 83.9% | 59.4% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 34.0 | 4.48e-01 | 88.4% | 100.0% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 31.0 | 3.85e-01 | 76.8% | 80.6% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 36.0 | 4.33e-01 | 89.3% | 90.7% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 31.0 | 3.81e-01 | 71.4% | 79.4% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 31.0 | 3.99e-01 | 89.3% | 96.7% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 31.0 | 3.41e-01 | 97.3% | 68.1% |
| 7onnA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.53 | 30.0 | 3.63e-01 | 81.2% | 89.7% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 31.0 | 3.15e-01 | 98.2% | 58.7% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 46.0 | 3.33e-01 | 98.2% | 33.3% |
| 2o6yA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.52 | 41.0 | 3.00e-01 | 84.8% | 87.1% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3495504 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 33.0 | 4.72e-01 | 77.7% | 96.0% |
| 3759994 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 33.0 | 4.60e-01 | 75.9% | 90.9% |
| 3229130 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.71 | 33.0 | 4.80e-01 | 74.1% | 100.0% |
| 3231816 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.71 | 32.0 | 4.22e-01 | 73.2% | 78.3% |
| 3889817 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.70 | 35.0 | 4.12e-01 | 79.5% | 67.5% |
| 3932555 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.69 | 33.0 | 3.95e-01 | 76.8% | 66.7% |
| 3478184 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 34.0 | 3.59e-01 | 74.1% | 52.0% |
| 3507787 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 32.0 | 4.62e-01 | 75.0% | 100.0% |
| 3246596 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.67 | 34.0 | 4.06e-01 | 75.0% | 70.7% |
| 3888041 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.67 | 36.0 | 4.58e-01 | 80.4% | 89.2% |
| 3582723 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.67 | 34.0 | 4.14e-01 | 75.0% | 75.7% |
| 3318958 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.66 | 33.0 | 3.89e-01 | 75.0% | 66.3% |
| 160865 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.66 | 35.0 | 4.07e-01 | 80.4% | 71.2% |
| 3649560 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.65 | 34.0 | 3.61e-01 | 76.8% | 56.0% |
| 3796365 | 101.1.1.421 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain, CUT | 0.64 | 35.0 | 2.93e-01 | 79.5% | 30.8% |
| 3863299 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.64 | 33.0 | 4.03e-01 | 71.4% | 78.6% |
| 3613957 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.62 | 35.0 | 4.16e-01 | 70.5% | 81.3% |
| 3767171 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.60 | 39.0 | 4.16e-01 | 96.4% | 75.8% |
| 3611567 | 4156.1.1.9 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › MKT1_C | 0.56 | 50.0 | 3.90e-01 | 100.0% | 65.6% |
| 5027285 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.56 | 39.0 | 3.51e-01 | 89.3% | 51.6% |
| 4931685 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.56 | 40.0 | 3.73e-01 | 92.9% | 59.3% |
| 4677439 | 101.1.1.19 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB | 0.55 | 39.0 | 3.60e-01 | 75.0% | 79.4% |
| 4410759 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 31.0 | 3.15e-01 | 97.3% | 55.7% |
| 3596210 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.53 | 44.0 | 2.79e-01 | 93.8% | 48.2% |
| 5027752 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 32.0 | 3.69e-01 | 100.0% | 86.3% |
| 3917442 | 109.4.1.1893 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ICE1_C | 0.52 | 32.0 | 2.66e-01 | 89.3% | 33.5% |