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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00189
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00189
Identity
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-95
Domain cluster:
rep: HQ317390.1__AFK66689.1__COPG_00093__00093__D5-82
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19835.7 best | SegE_GIY-YIG | 31.0 | 3.80e-07 | 84.8% | 67.5% |
D2
medium
residues 181-245_323-329
D3
medium
residues 249-317
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.91 | 67.0 | 5.16e-01 | 100.0% | 38.4% |
| 6vgwA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.89 | 64.0 | 4.92e-01 | 100.0% | 36.9% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.81 | 68.0 | 4.99e-01 | 100.0% | 36.5% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.78 | 71.0 | 5.06e-01 | 100.0% | 37.3% |
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.78 | 67.0 | 5.14e-01 | 100.0% | 44.4% |
| 4e2tB00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.78 | 70.0 | 5.08e-01 | 100.0% | 39.1% |
| 1at0A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.75 | 65.0 | 4.99e-01 | 100.0% | 44.1% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 41.0 | 4.01e-01 | 100.0% | 53.8% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 45.0 | 3.87e-01 | 72.5% | 84.8% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 45.0 | 3.64e-01 | 73.9% | 78.3% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 39.0 | 3.63e-01 | 100.0% | 48.9% |
| 3tesA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 39.0 | 3.61e-01 | 100.0% | 47.9% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.61 | 48.0 | 4.78e-01 | 98.6% | 81.9% |
| 5ccbA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.61 | 48.0 | 4.81e-01 | 98.6% | 83.3% |
| 3pfnC02 | 2.60.200.30 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 | 0.60 | 52.0 | 4.22e-01 | 100.0% | 99.3% |
| 1owwA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 38.0 | 3.52e-01 | 100.0% | 48.4% |
| 5eqjB01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 46.0 | 4.59e-01 | 97.1% | 81.7% |
| 3up1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.35e-01 | 100.0% | 46.2% |
| 5bviA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 47.0 | 3.61e-01 | 100.0% | 88.5% |
| 2lc1A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 47.0 | 4.25e-01 | 98.6% | 94.0% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.55 | 47.0 | 4.04e-01 | 100.0% | 75.2% |
| 3gqsB00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 47.0 | 4.23e-01 | 100.0% | 100.0% |
| 4brvA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.55 | 37.0 | 3.05e-01 | 100.0% | 38.7% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.54 | 42.0 | 2.97e-01 | 100.0% | 28.6% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.51 | 41.0 | 3.63e-01 | 100.0% | 58.7% |
| 4qq1C03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 43.0 | 4.07e-01 | 100.0% | 90.9% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013038 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 67.0 | 4.93e-01 | 100.0% | 33.8% |
| 4993732 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 61.0 | 4.90e-01 | 100.0% | 39.2% |
| 2636473 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 64.0 | 4.88e-01 | 100.0% | 35.9% |
| 4457379 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 66.0 | 5.05e-01 | 100.0% | 37.2% |
| 5028312 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.87 | 65.0 | 4.99e-01 | 100.0% | 38.6% |
| 4940451 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.86 | 70.0 | 5.46e-01 | 100.0% | 43.7% |
| 4971400 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 70.0 | 4.44e-01 | 100.0% | 20.0% |
| 5023539 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.86 | 67.0 | 4.96e-01 | 100.0% | 36.1% |
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 69.0 | 4.42e-01 | 100.0% | 21.1% |
| 4978263 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 70.0 | 5.09e-01 | 100.0% | 36.4% |
| 4054994 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 68.0 | 4.93e-01 | 100.0% | 34.7% |
| 5002632 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 68.0 | 5.13e-01 | 100.0% | 39.6% |
| 4872043 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 69.0 | 5.24e-01 | 100.0% | 40.7% |
| 3602706 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.83 | 69.0 | 5.37e-01 | 100.0% | 44.2% |
| 5030213 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 71.0 | 5.31e-01 | 100.0% | 41.3% |
| 4993813 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 67.0 | 4.96e-01 | 100.0% | 37.5% |
| 4565870 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 69.0 | 5.19e-01 | 100.0% | 40.6% |
| 3257888 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.81 | 70.0 | 5.24e-01 | 100.0% | 42.0% |
| 5031634 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.80 | 70.0 | 5.17e-01 | 100.0% | 40.0% |
| 4930433 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.80 | 69.0 | 5.17e-01 | 100.0% | 41.3% |
| 5030847 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 68.0 | 5.00e-01 | 100.0% | 38.7% |
| 4667152 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.79 | 70.0 | 5.21e-01 | 100.0% | 41.1% |
| 2524072 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.79 | 69.0 | 5.02e-01 | 100.0% | 37.6% |
| 5070290 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.78 | 45.0 | 3.62e-01 | 100.0% | 32.0% |
| 4993871 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 67.0 | 5.52e-01 | 100.0% | 55.7% |
| 4983616 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 69.0 | 5.02e-01 | 100.0% | 38.8% |
| 4487998 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.76 | 66.0 | 4.77e-01 | 100.0% | 36.6% |
| 4600944 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.76 | 66.0 | 4.77e-01 | 100.0% | 36.6% |
| 4070999 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.76 | 66.0 | 4.93e-01 | 100.0% | 41.3% |
| 3518586 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.75 | 66.0 | 4.59e-01 | 100.0% | 31.7% |
| 4243055 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.75 | 65.0 | 4.57e-01 | 100.0% | 32.8% |
| 4998394 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.75 | 70.0 | 5.24e-01 | 100.0% | 50.3% |
| 4039971 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.75 | 70.0 | 5.03e-01 | 100.0% | 39.4% |
| 4975503 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.74 | 70.0 | 4.98e-01 | 100.0% | 43.9% |
| 4948019 | 69.1.1.17 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › MCM | 0.74 | 69.0 | 5.00e-01 | 100.0% | 41.1% |
| 3861422 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.74 | 65.0 | 4.65e-01 | 100.0% | 34.7% |
| 5065032 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.74 | 69.0 | 5.04e-01 | 100.0% | 42.4% |
| 4941327 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.73 | 68.0 | 5.17e-01 | 100.0% | 53.1% |
| 3877825 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.71 | 66.0 | 4.58e-01 | 100.0% | 33.3% |
| 3230518 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.71 | 65.0 | 4.93e-01 | 100.0% | 46.5% |
| 3624434 | 821.1.1.8 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd | 0.71 | 51.0 | 3.68e-01 | 100.0% | 28.1% |
| 4127166 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.70 | 65.0 | 4.95e-01 | 100.0% | 48.0% |
| 4991483 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.64 | 46.0 | 3.79e-01 | 73.9% | 79.1% |
| 3304988 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.61 | 47.0 | 4.73e-01 | 95.7% | 81.4% |
| 4404140 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.59 | 54.0 | 3.92e-01 | 100.0% | 38.9% |
| 3234647 | 69.1.2.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH | 0.55 | 39.0 | 3.34e-01 | 75.4% | 87.7% |
| 3967657 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 42.0 | 3.90e-01 | 88.4% | 86.7% |
| 3187813 | 220.1.1.204 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_24 | 0.52 | 44.0 | 3.80e-01 | 100.0% | 73.0% |
| 2389879 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.92e-01 | 84.1% | 94.0% |
| 3240167 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 45.0 | 2.99e-01 | 100.0% | 23.0% |
D4
medium
residues 339-351_502-561
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 54.3 | 1.50e-14 | 94.5% | 10.3% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.93 | 88.0 | 5.10e-01 | 100.0% | 41.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978395 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.93 | 88.0 | 5.03e-01 | 100.0% | 37.0% |
| 3949156 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.93 | 88.0 | 5.02e-01 | 100.0% | 37.0% |
| 4895332 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.93 | 88.0 | 5.12e-01 | 100.0% | 44.4% |
| 3100301 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.93 | 87.0 | 4.94e-01 | 100.0% | 34.9% |
| 4895340 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.91 | 86.0 | 4.99e-01 | 100.0% | 43.9% |
| 3377431 | 170.1.1.26 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 | 0.50 | 34.0 | 3.45e-01 | 71.2% | 69.3% |
D5
medium
residues 352-381_407-450_490-501
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.95 | 91.0 | 5.35e-01 | 100.0% | 27.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949156 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.96 | 92.0 | 5.35e-01 | 100.0% | 25.1% |
| 3978395 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.96 | 92.0 | 5.34e-01 | 100.0% | 25.1% |
| 4895332 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.93 | 88.0 | 5.26e-01 | 100.0% | 29.7% |
D6
medium
residues 382-406_451-489
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 47.0 | 4.89e-01 | 70.3% | 85.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044308 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.97 | 92.0 | 5.15e-01 | 100.0% | 16.9% |
| 4987959 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.96 | 91.0 | 5.20e-01 | 100.0% | 18.3% |
| 5065401 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.95 | 90.0 | 5.01e-01 | 100.0% | 15.7% |
| 3885941 | 101.1.1.132 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N | 0.61 | 51.0 | 5.01e-01 | 95.3% | 88.6% |
| 3471570 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 47.0 | 3.24e-01 | 95.3% | 93.5% |
| 4208459 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.55 | 42.0 | 4.34e-01 | 98.4% | 93.3% |
| 4479187 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.54 | 41.0 | 4.12e-01 | 95.3% | 81.5% |
| 4985898 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 37.0 | 3.45e-01 | 90.6% | 57.8% |
D7
medium
residues 577-649
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 46.1 | 4.50e-12 | 100.0% | 10.5% |
| PF01228.27 | Gly_radical | 28.7 | 2.20e-06 | 98.6% | 50.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ob9B02 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.57 | 43.0 | 3.95e-01 | 83.6% | 84.3% |
| 2fdbN00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 39.0 | 3.12e-01 | 71.2% | 79.7% |
| 1q1uA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 39.0 | 3.18e-01 | 71.2% | 87.7% |
| 3mjgX02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 32.0 | 3.08e-01 | 72.6% | 51.7% |
| 2q7aA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 35.0 | 2.87e-01 | 72.6% | 40.1% |
| 1pwaA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 36.0 | 3.18e-01 | 76.7% | 79.7% |
| 1rqgA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.51 | 41.0 | 3.36e-01 | 93.2% | 81.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596701 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.63 | 35.0 | 3.42e-01 | 72.6% | 48.8% |
| 3708672 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 35.0 | 3.32e-01 | 72.6% | 45.9% |
| 3610398 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 34.0 | 3.46e-01 | 72.6% | 52.0% |
| 3712063 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.60 | 46.0 | 3.90e-01 | 86.3% | 67.4% |
| 3599423 | 4043.1.1.0 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase | 0.58 | 46.0 | 3.85e-01 | 87.7% | 70.8% |
| 4421229 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.56 | 42.0 | 3.70e-01 | 79.5% | 87.4% |
| 4027733 | 708.1.2.8 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Eapp_C | 0.51 | 40.0 | 3.70e-01 | 87.7% | 96.9% |
| 3669284 | 109.4.1.1738 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.51 | 37.0 | 2.26e-01 | 82.2% | 20.3% |
| 3950185 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.50 | 34.0 | 3.24e-01 | 71.2% | 57.8% |
| 3578353 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.50 | 42.0 | 2.73e-01 | 95.9% | 62.5% |