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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00200

Bact-Vir

SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00200

Identity

Kingdom:
phage

Quality

93.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.82 75.0 6.87e-01 100.0% 97.7%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.80 72.0 6.69e-01 100.0% 91.8%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.74 64.0 6.01e-01 100.0% 94.1%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.70 50.0 4.89e-01 100.0% 70.3%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.64 52.0 4.70e-01 95.6% 85.1%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 50.0 4.46e-01 86.8% 82.7%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 48.0 4.47e-01 86.8% 83.5%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.63 52.0 4.64e-01 95.6% 85.0%
2rbkA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.62 51.0 4.59e-01 95.6% 85.1%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 43.0 4.60e-01 83.8% 88.1%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 46.0 4.02e-01 86.8% 77.0%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 45.0 4.70e-01 82.4% 100.0%
1rkqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 49.0 4.32e-01 95.6% 86.0%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 42.0 3.60e-01 76.5% 97.3%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 44.0 4.53e-01 86.8% 98.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.50e-01 85.3% 100.0%
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 44.0 4.58e-01 85.3% 98.4%
4wd3A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 44.0 4.35e-01 86.8% 92.0%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 4.03e-01 86.8% 89.9%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.52e-01 79.4% 97.3%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 44.0 3.06e-01 91.2% 36.2%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 4.21e-01 86.8% 94.7%
1t8sA02 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 47.0 3.16e-01 98.5% 82.8%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.55 48.0 4.06e-01 100.0% 79.5%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 42.0 4.10e-01 82.4% 100.0%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.88e-01 100.0% 78.0%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 42.0 2.81e-01 86.8% 25.5%
5c50B00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 41.0 3.04e-01 82.4% 67.6%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.67e-01 86.8% 86.1%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 45.0 4.28e-01 100.0% 90.4%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.54 37.0 3.10e-01 100.0% 37.2%
4hpmD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 40.0 3.84e-01 85.3% 89.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.95e-01 79.4% 90.9%
1ni3A02 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 40.0 3.61e-01 85.3% 78.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 4.08e-01 98.5% 85.4%
1m94A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 40.0 3.94e-01 85.3% 90.4%
1stzA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 42.0 3.36e-01 92.6% 83.9%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.53e-01 95.6% 48.5%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 39.0 3.83e-01 85.3% 75.6%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.87e-01 95.6% 87.8%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 44.0 3.23e-01 98.5% 95.0%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.30e-01 89.7% 97.1%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.33e-01 75.0% 81.7%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.60e-01 85.3% 94.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 41.0 3.41e-01 91.2% 90.8%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.44e-01 91.2% 91.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963717 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.84 77.0 6.94e-01 100.0% 90.0%
3972112 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.83 76.0 7.05e-01 100.0% 94.1%
4103307 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.83 76.0 6.99e-01 100.0% 91.8%
3588312 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.82 75.0 6.83e-01 100.0% 89.8%
5064118 322.1.1.0 a+b two layers › HPr-like › HPr-like › HPr-like 0.82 75.0 6.83e-01 100.0% 89.8%
4568147 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.81 73.0 6.68e-01 100.0% 88.8%
3164579 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.81 73.0 6.28e-01 100.0% 77.1%
4990 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.80 73.0 6.79e-01 100.0% 91.7%
5056082 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.80 72.0 6.10e-01 100.0% 81.8%
3945048 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.80 72.0 6.66e-01 100.0% 92.9%
4008836 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.79 71.0 6.61e-01 100.0% 95.3%
4009784 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.79 71.0 6.44e-01 100.0% 93.3%
3979258 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.79 70.0 6.43e-01 100.0% 93.3%
3978801 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.79 71.0 6.58e-01 100.0% 91.8%
3948410 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.79 70.0 6.40e-01 100.0% 87.8%
4447647 322.1.1.5 a+b two layers › HPr-like › HPr-like › HPr-like › PF29819 0.72 64.0 5.55e-01 100.0% 80.8%
432311 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.69 50.0 4.74e-01 100.0% 65.0%
3824515 327.11.2.11 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.69 59.0 5.28e-01 100.0% 89.0%
5035277 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 3.87e-01 86.8% 33.9%
3322600 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.65 51.0 4.81e-01 86.8% 89.4%
4020630 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.64 50.0 4.55e-01 86.8% 92.6%
3619962 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.63 49.0 4.64e-01 86.8% 87.1%
3963940 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.63 51.0 4.60e-01 94.1% 85.0%
1585470 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.63 53.0 4.69e-01 95.6% 78.2%
4681298 304.24.1.16 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA 0.63 54.0 4.82e-01 100.0% 74.0%
3226828 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 54.0 4.53e-01 100.0% 64.8%
3819239 221.1.1.13 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA 0.61 46.0 4.26e-01 86.8% 78.9%
3220394 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 50.0 4.66e-01 100.0% 85.6%
3903107 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 51.0 4.59e-01 100.0% 84.2%
4945544 7587.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases 0.58 45.0 3.73e-01 86.8% 50.8%
5023031 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.58 40.0 3.28e-01 92.6% 39.2%
3711495 4951.1.1.1 alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2 0.57 44.0 4.61e-01 88.2% 96.7%
3241250 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 43.0 3.88e-01 86.8% 84.8%
4025192 4988.1.1.0 a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain 0.57 43.0 4.49e-01 86.8% 93.7%
3225139 10.4.1.9 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.56 49.0 4.18e-01 100.0% 64.3%
3600674 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.56 42.0 4.48e-01 82.4% 100.0%
3500029 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.56 44.0 4.47e-01 88.2% 90.8%
3473630 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 42.0 3.90e-01 86.8% 78.9%
None 0.55 47.0 3.13e-01 100.0% 43.3%
4002865 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.55 47.0 3.82e-01 100.0% 73.6%
4011274 1207.1.1.0 a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain 0.55 45.0 3.14e-01 97.1% 53.8%
3684143 1207.1.1.1 a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C 0.55 47.0 3.14e-01 98.5% 44.2%
3889188 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 41.0 3.39e-01 85.3% 54.3%
3773242 1207.1.1.1 a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C 0.55 47.0 3.09e-01 100.0% 41.9%
3569553 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 41.0 3.83e-01 85.3% 76.7%
3318800 221.1.1.22 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ufm1 0.54 40.0 4.15e-01 79.4% 96.7%
3694112 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.78e-01 94.1% 88.3%
3078875 221.1.1.7 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.54 45.0 3.49e-01 98.5% 54.3%
4081896 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 42.0 3.54e-01 86.8% 88.3%
5019916 223.1.1.62 a+b three layers › Profilin-like › sensor domains › sensor domains › PocR 0.53 43.0 3.26e-01 94.1% 82.6%
146288 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.53 36.0 3.91e-01 85.3% 96.1%
5062453 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.53 37.0 3.10e-01 75.0% 74.4%
3254529 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.52 39.0 3.17e-01 86.8% 69.0%
4403519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 2.88e-01 88.2% 32.4%