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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00244
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00244
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-182
Domain cluster:
rep: OP820472.1__WAB10619.1__SEA_ECLIPTUS_54__00054__D11-147
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05973.21 best | Gp49 | 59.3 | 4.60e-16 | 82.7% | 88.9% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.79 | 58.0 | 6.43e-01 | 80.9% | 95.5% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.66 | 43.0 | 5.06e-01 | 80.0% | 96.1% |
| 2eabB01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.61 | 53.0 | 4.10e-01 | 96.4% | 85.9% |
| 6izcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 53.0 | 4.06e-01 | 99.1% | 92.8% |
| 1k38A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 52.0 | 4.08e-01 | 96.4% | 98.7% |
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.57 | 32.0 | 3.58e-01 | 79.1% | 72.0% |
| 2ex2A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 49.0 | 3.85e-01 | 100.0% | 92.7% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 38.0 | 4.24e-01 | 86.4% | 92.9% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 35.0 | 3.66e-01 | 82.7% | 70.4% |
| 6fopA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.54 | 42.0 | 3.41e-01 | 85.5% | 76.1% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.53 | 29.0 | 3.52e-01 | 77.3% | 90.2% |
| 7bwcA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 41.0 | 2.98e-01 | 84.5% | 40.9% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.50 | 39.0 | 4.00e-01 | 90.0% | 84.9% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 38.0 | 3.56e-01 | 81.8% | 74.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588277 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.93 | 88.0 | 8.69e-01 | 98.2% | 95.7% |
| 3948814 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.93 | 82.0 | 8.47e-01 | 100.0% | 97.1% |
| 5080833 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.92 | 84.0 | 8.64e-01 | 98.2% | 99.0% |
| 2523878 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.88 | 84.0 | 8.19e-01 | 100.0% | 95.0% |
| 3944846 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.88 | 84.0 | 8.30e-01 | 100.0% | 95.7% |
| 3278065 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.87 | 79.0 | 7.96e-01 | 99.1% | 95.5% |
| 3977405 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.84 | 73.0 | 7.62e-01 | 96.4% | 100.0% |
| 4937283 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.83 | 65.0 | 7.06e-01 | 85.5% | 95.7% |
| 4933908 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.82 | 58.0 | 6.60e-01 | 78.2% | 94.1% |
| 3945861 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.79 | 61.0 | 6.74e-01 | 88.2% | 97.8% |
| 4993341 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.79 | 48.0 | 5.92e-01 | 77.3% | 97.1% |
| 4942674 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.75 | 46.0 | 5.73e-01 | 77.3% | 100.0% |
| 4993827 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.75 | 48.0 | 5.58e-01 | 78.2% | 90.0% |
| 4959385 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.73 | 47.0 | 5.61e-01 | 78.2% | 96.0% |
| 4930969 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.69 | 46.0 | 5.37e-01 | 79.1% | 100.0% |
| 5028231 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.68 | 63.0 | 6.24e-01 | 100.0% | 97.3% |
| 4992459 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.67 | 42.0 | 5.05e-01 | 77.3% | 100.0% |
| 3589339 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.66 | 52.0 | 5.53e-01 | 88.2% | 95.8% |
| 4968686 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.65 | 48.0 | 5.08e-01 | 83.6% | 86.0% |
| 3420734 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.61 | 48.0 | 3.81e-01 | 84.5% | 97.9% |
| 3839094 | 234.3.1.6 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › DUF3519, PBECR3 | 0.61 | 48.0 | 4.04e-01 | 83.6% | 54.4% |
| 3591928 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 42.0 | 2.88e-01 | 70.9% | 29.2% |
| 5077455 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.60 | 41.0 | 2.86e-01 | 70.0% | 33.1% |
| 5035278 | 5.1.5.235 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta_propel | 0.60 | 42.0 | 3.33e-01 | 71.8% | 49.8% |
| 3952435 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.60 | 52.0 | 4.52e-01 | 99.1% | 97.8% |
| 5014687 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 35.0 | 4.41e-01 | 79.1% | 100.0% |
| 5007469 | 5.1.11.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel | 0.59 | 44.0 | 2.89e-01 | 79.1% | 23.5% |
| 3989328 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 40.0 | 4.27e-01 | 80.9% | 81.9% |
| 3740851 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.57 | 45.0 | 3.55e-01 | 83.6% | 96.9% |
| 3061935 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.57 | 39.0 | 4.07e-01 | 87.3% | 76.8% |
| 3710238 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 40.0 | 3.51e-01 | 79.1% | 50.6% |
| 3953943 | 9.27.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa | 0.54 | 34.0 | 3.47e-01 | 82.7% | 63.6% |
| 4961327 | 3264.1.1.0 ↗ | 0.53 | 36.0 | 3.20e-01 | 80.0% | 47.5% | |
| 3687869 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 40.0 | 3.65e-01 | 100.0% | 60.7% |
| 3605618 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 44.0 | 4.02e-01 | 96.4% | 87.7% |
| 3785788 | 5.1.4.31 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C | 0.51 | 43.0 | 2.76e-01 | 90.0% | 27.1% |
| 5078190 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.51 | 43.0 | 3.27e-01 | 91.8% | 66.4% |
| 3284788 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 31.0 | 3.54e-01 | 77.3% | 82.5% |
| 3934301 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.51 | 43.0 | 3.53e-01 | 93.6% | 69.8% |
| 3659272 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 40.0 | 2.99e-01 | 85.5% | 61.8% |
| 3768647 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 39.0 | 2.82e-01 | 84.5% | 49.3% |
D2
medium
residues 3-60