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SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00249
Bact-VirSRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00249
Identity
- Kingdom:
- phage
Quality
88.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-65
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oa5A01 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.71 | 48.0 | 3.53e-01 | 70.4% | 53.0% |
| 1zy9A03 | 2.60.40.2760 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 46.0 | 4.96e-01 | 75.9% | 97.7% |
| 3o4hA01 | 2.130.10.150 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain | 0.64 | 47.0 | 3.02e-01 | 83.3% | 25.7% |
| 4dzoA02 | 3.30.457.60 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.63 | 51.0 | 4.59e-01 | 92.6% | 66.2% |
| 3wyfE00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 45.0 | 3.40e-01 | 83.3% | 36.6% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.59 | 50.0 | 4.04e-01 | 98.1% | 50.0% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.57 | 47.0 | 4.73e-01 | 100.0% | 96.3% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.54 | 36.0 | 2.56e-01 | 72.2% | 25.7% |
| 1lbvA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 44.0 | 3.40e-01 | 100.0% | 69.6% |
| 3mnmA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.51 | 42.0 | 3.48e-01 | 100.0% | 56.2% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.51 | 36.0 | 2.97e-01 | 75.9% | 43.8% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 36.0 | 3.36e-01 | 81.5% | 80.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4527337 | 206.1.2.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin | 0.71 | 53.0 | 3.36e-01 | 79.6% | 89.8% |
| 3511696 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.60 | 45.0 | 4.16e-01 | 87.0% | 62.9% |
| 4132528 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.56 | 45.0 | 3.15e-01 | 92.6% | 32.8% |
| 4606998 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.56 | 47.0 | 3.33e-01 | 100.0% | 31.1% |
| 3198980 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.56 | 40.0 | 3.63e-01 | 88.9% | 56.0% |
| 5022814 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.55 | 43.0 | 3.93e-01 | 87.0% | 90.7% |
| 3484618 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.53 | 39.0 | 3.59e-01 | 83.3% | 81.3% |
| 3462999 | 708.1.1.7 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut | 0.52 | 39.0 | 3.67e-01 | 90.7% | 64.3% |
| 3827179 | 708.1.1.7 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut | 0.51 | 37.0 | 3.49e-01 | 88.9% | 62.9% |
D2
medium
residues 66-124
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6njeA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.58 | 49.0 | 3.19e-01 | 100.0% | 82.5% |
| 1ry6A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.56 | 47.0 | 3.03e-01 | 100.0% | 43.3% |
| 3fzqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.55 | 47.0 | 3.84e-01 | 100.0% | 63.5% |
| 4v19K02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.52 | 41.0 | 3.90e-01 | 96.6% | 72.0% |