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SRR1747043_scaffold_13_prodigal-single.1__X__X__00064
Bact-VirSRR1747043_scaffold_13_prodigal-single.1__X__X__00064
Identity
- Kingdom:
- phage
Quality
58.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-106
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bc0A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.75 | 55.0 | 5.18e-01 | 77.8% | 70.9% |
| 2ii2A02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.73 | 53.0 | 5.73e-01 | 76.4% | 100.0% |
| 2ii2A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.73 | 55.0 | 4.95e-01 | 80.6% | 63.3% |
| 4evfA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.72 | 52.0 | 5.30e-01 | 86.1% | 77.5% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.72 | 53.0 | 5.26e-01 | 81.9% | 75.7% |
| 1dk5A02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.72 | 56.0 | 5.66e-01 | 86.1% | 83.3% |
| 4hreA03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.70 | 51.0 | 4.80e-01 | 77.8% | 70.1% |
| 1m9iA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.70 | 51.0 | 4.95e-01 | 81.9% | 70.0% |
| 1n00A01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.69 | 52.0 | 4.93e-01 | 79.2% | 72.6% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.68 | 50.0 | 5.38e-01 | 83.3% | 93.4% |
| 1anxA04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.67 | 50.0 | 5.03e-01 | 86.1% | 80.6% |
| 4evfA03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.66 | 50.0 | 4.85e-01 | 80.6% | 73.8% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.66 | 50.0 | 3.97e-01 | 83.3% | 73.9% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 51.0 | 4.81e-01 | 86.1% | 88.5% |
| 1dk5A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.64 | 49.0 | 4.96e-01 | 86.1% | 84.3% |
| 3mn2A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 49.0 | 4.34e-01 | 93.1% | 56.5% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.62 | 43.0 | 3.75e-01 | 73.6% | 58.9% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.61 | 46.0 | 4.63e-01 | 81.9% | 93.2% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.58 | 43.0 | 4.20e-01 | 97.2% | 72.2% |
| 4xaxB02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.58 | 45.0 | 4.13e-01 | 87.5% | 62.6% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.58 | 42.0 | 3.56e-01 | 76.4% | 72.3% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.58 | 49.0 | 4.28e-01 | 97.2% | 94.8% |
| 3evyA00 | 1.20.58.910 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 43.0 | 4.19e-01 | 83.3% | 94.0% |
| 7a8rA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 43.0 | 3.22e-01 | 83.3% | 40.2% |
| 3fbiD00 | 1.10.10.1340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Mediator of RNA polymerase II, submodule Med31 (Soh1) | 0.56 | 44.0 | 4.06e-01 | 87.5% | 75.5% |
| 3gdeA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.55 | 38.0 | 2.74e-01 | 72.2% | 50.9% |
| 4b7hA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.55 | 43.0 | 3.71e-01 | 84.7% | 94.8% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 44.0 | 3.54e-01 | 95.8% | 43.0% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 39.0 | 4.17e-01 | 98.6% | 90.0% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.53 | 43.0 | 3.78e-01 | 91.7% | 92.0% |
| 2h21A02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.51 | 40.0 | 3.10e-01 | 86.1% | 85.5% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 36.0 | 3.54e-01 | 76.4% | 76.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3582336 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.73 | 54.0 | 5.49e-01 | 77.8% | 85.7% |
| 4111394 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.73 | 54.0 | 5.32e-01 | 86.1% | 74.7% |
| 3900501 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.72 | 53.0 | 5.06e-01 | 81.9% | 67.1% |
| 1872973 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.71 | 52.0 | 5.13e-01 | 77.8% | 78.9% |
| 3559767 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.71 | 54.0 | 5.41e-01 | 83.3% | 82.7% |
| 4070707 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.70 | 49.0 | 5.05e-01 | 86.1% | 77.1% |
| 4455497 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.70 | 54.0 | 5.21e-01 | 83.3% | 77.5% |
| 3442355 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.69 | 56.0 | 5.16e-01 | 88.9% | 71.6% |
| 3993727 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.68 | 49.0 | 4.63e-01 | 77.8% | 66.7% |
| 3937501 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.68 | 53.0 | 5.40e-01 | 90.3% | 87.1% |
| 3200385 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.66 | 54.0 | 5.14e-01 | 88.9% | 82.4% |
| 3088236 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.66 | 48.0 | 4.59e-01 | 77.8% | 72.1% |
| 3431469 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.66 | 48.0 | 4.72e-01 | 90.3% | 70.0% |
| 3326398 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.61 | 51.0 | 3.56e-01 | 91.7% | 33.3% |
| 4196051 | 4296.1.1.1 ↗ | alpha arrays › BH2638-like › BH2638-like › BH2638-like › UPF0223 | 0.58 | 47.0 | 4.54e-01 | 93.1% | 98.8% |
| 3612308 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.58 | 50.0 | 4.35e-01 | 98.6% | 92.9% |
| 3626995 | 109.3.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 | 0.57 | 46.0 | 4.12e-01 | 93.1% | 83.6% |
| 3361032 | 109.30.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 › Nup84_Nup100 | 0.57 | 50.0 | 3.19e-01 | 100.0% | 30.8% |
| 3838667 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 41.0 | 4.01e-01 | 81.9% | 68.8% |
| 3595593 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 3.01e-01 | 100.0% | 37.1% |
| 3288975 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 4.01e-01 | 91.7% | 89.2% |
D2
high
residues 145-206
D3
high
residues 443-634
Domain cluster:
rep: ON464759.1__UTV60870.1__JDFnp1_82__00082__D31-221
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kw0A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.77 | 65.0 | 6.62e-01 | 90.6% | 89.4% |
| 2if6B00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.73 | 64.0 | 6.60e-01 | 90.6% | 98.3% |
| 1f6fB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 25.0 | 3.53e-01 | 93.2% | 72.2% |
| 5irbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 22.0 | 3.03e-01 | 90.6% | 61.5% |
| 2q7nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 24.0 | 3.15e-01 | 91.7% | 71.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259022 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.84 | 71.0 | 7.07e-01 | 88.0% | 96.5% |
| 3388306 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.80 | 64.0 | 7.05e-01 | 89.6% | 98.8% |
| 3256028 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.80 | 69.0 | 6.58e-01 | 88.5% | 83.3% |
| 4009350 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.80 | 70.0 | 6.81e-01 | 90.6% | 92.9% |
| 3599834 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.80 | 68.0 | 6.01e-01 | 88.0% | 78.1% |
| 3326231 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.77 | 66.0 | 6.09e-01 | 89.6% | 81.6% |
| 379641 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.76 | 66.0 | 6.62e-01 | 90.6% | 89.1% |
| 3983612 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.75 | 64.0 | 6.68e-01 | 88.5% | 98.9% |
| 3979604 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.75 | 65.0 | 6.64e-01 | 89.6% | 97.3% |
| 4028987 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.74 | 63.0 | 6.51e-01 | 87.5% | 93.3% |
| 7414 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.74 | 64.0 | 6.58e-01 | 89.6% | 97.3% |
| 3277734 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.70 | 61.0 | 5.94e-01 | 91.1% | 95.1% |
| 3980597 | 219.1.1.72 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF2145 | 0.66 | 56.0 | 5.50e-01 | 89.1% | 86.3% |
| 3528847 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.61 | 22.0 | 3.13e-01 | 91.1% | 66.7% |
| 3932681 | 219.1.1.25 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT | 0.60 | 40.0 | 4.81e-01 | 70.3% | 100.0% |
| 3272992 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 43.0 | 4.79e-01 | 81.8% | 99.4% |
| 3789647 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 23.0 | 2.54e-01 | 85.4% | 48.4% |
D4
high
residues 650-719