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SRR1747043_scaffold_13_prodigal-single.1__X__X__00092

Bact-Vir

SRR1747043_scaffold_13_prodigal-single.1__X__X__00092

Identity

Kingdom:
phage

Quality

65.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-73
PDB
D2 high residues 75-163
PDB
Domain cluster: rep: SRR1747035_scaffold_2_prodigal-single.1__X__X__00149__D5-83
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 41.0 3.96e-01 100.0% 52.9%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 36.0 3.60e-01 100.0% 56.5%
1zybA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 39.0 2.96e-01 75.3% 61.9%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 29.0 3.60e-01 100.0% 92.2%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 34.0 3.88e-01 93.3% 93.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4245518 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 35.0 3.82e-01 94.4% 61.3%
4298930 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.65 39.0 3.92e-01 100.0% 58.9%
4083044 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 34.0 3.70e-01 94.4% 60.0%
4166012 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 34.0 3.70e-01 94.4% 60.0%
5000763 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 35.0 3.57e-01 93.3% 52.2%
4194551 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 34.0 3.64e-01 94.4% 58.7%
3602123 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 38.0 4.00e-01 100.0% 66.7%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 38.0 3.83e-01 100.0% 58.9%
4952455 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 38.0 3.82e-01 100.0% 59.6%
5022659 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 37.0 3.94e-01 94.4% 68.0%
3904189 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 34.0 3.31e-01 95.5% 46.0%
4482267 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 37.0 3.90e-01 100.0% 65.0%
5069810 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.60 36.0 3.76e-01 100.0% 65.0%
4402716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 33.0 3.38e-01 95.5% 56.5%
3810482 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.58 38.0 3.27e-01 95.5% 43.7%
3813200 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 35.0 3.29e-01 95.5% 47.4%
4125814 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.53 36.0 3.86e-01 70.8% 100.0%
3257740 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 31.0 3.07e-01 100.0% 54.7%