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SRR1747043_scaffold_24_prodigal-single.1__X__X__00094
Bact-VirSRR1747043_scaffold_24_prodigal-single.1__X__X__00094
Identity
- Kingdom:
- phage
Quality
51.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 167-242
Domain cluster:
rep: NC_041929.1__YP_009601225.1__FDH46_gp100__00100__D31-78_167-189
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 31.3 | 2.10e-07 | 59.2% | 100.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.78 | 55.0 | 5.89e-01 | 80.3% | 83.6% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 50.0 | 4.79e-01 | 80.3% | 90.9% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 4.17e-01 | 80.3% | 90.1% |
| 2hivA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.58 | 41.0 | 2.98e-01 | 75.0% | 81.7% |
| 4r24B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.52 | 35.0 | 3.47e-01 | 72.4% | 76.5% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.30e-01 | 88.2% | 57.3% |
| 3u1xA00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.51 | 38.0 | 2.81e-01 | 81.6% | 56.7% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.50 | 40.0 | 3.10e-01 | 88.2% | 98.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3985839 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 54.0 | 5.64e-01 | 77.6% | 75.7% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.79 | 62.0 | 6.44e-01 | 81.6% | 91.4% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.79 | 58.0 | 6.41e-01 | 76.3% | 96.8% |
| 4680476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.79 | 56.0 | 5.86e-01 | 80.3% | 80.0% |
| 2124476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.78 | 55.0 | 4.47e-01 | 80.3% | 41.5% |
| 3969916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 55.0 | 5.80e-01 | 82.9% | 81.4% |
| 3963519 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.76 | 53.0 | 5.68e-01 | 72.4% | 89.2% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.69 | 57.0 | 3.83e-01 | 92.1% | 77.6% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.67 | 54.0 | 3.59e-01 | 88.2% | 81.6% |
| 3968457 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.65 | 49.0 | 4.72e-01 | 80.3% | 92.9% |
| 3164516 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.63 | 47.0 | 4.59e-01 | 80.3% | 90.6% |
| 4257754 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.60 | 42.0 | 2.92e-01 | 72.4% | 24.7% |
| 3598919 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.56 | 43.0 | 3.11e-01 | 84.2% | 62.1% |
| 3571315 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 44.0 | 3.14e-01 | 94.7% | 69.4% |
| 4553544 | 3601.1.1.1 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg | 0.51 | 42.0 | 3.16e-01 | 92.1% | 42.6% |
D2
high
residues 288-379
Domain cluster:
rep: OP753453.1__WAB24442.1__X__00067__D80-189
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3czbA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.82 | 78.0 | 6.17e-01 | 100.0% | 58.8% |
| 2g5dA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.81 | 77.0 | 5.77e-01 | 100.0% | 51.7% |
| 2ae0X01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.80 | 75.0 | 5.84e-01 | 100.0% | 61.1% |
| 7xc8A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.73 | 67.0 | 6.18e-01 | 96.7% | 99.1% |
| 3sumB00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.73 | 66.0 | 5.73e-01 | 96.7% | 87.5% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.72 | 56.0 | 6.10e-01 | 98.9% | 98.7% |
| 1qcsA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.71 | 59.0 | 6.24e-01 | 100.0% | 98.8% |
| 2kqaA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.69 | 61.0 | 5.56e-01 | 94.6% | 90.8% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.65 | 54.0 | 5.60e-01 | 98.9% | 96.4% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.62 | 55.0 | 5.38e-01 | 100.0% | 94.2% |
| 2ki8A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 56.0 | 5.00e-01 | 98.9% | 86.4% |
| 1twfA03 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 50.0 | 4.86e-01 | 100.0% | 80.2% |
| 1twfB06 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.61 | 56.0 | 4.15e-01 | 100.0% | 80.7% |
| 3ougA00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 50.0 | 4.79e-01 | 100.0% | 77.4% |
| 8e9gG01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.56 | 49.0 | 4.78e-01 | 95.7% | 100.0% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.56 | 50.0 | 4.30e-01 | 100.0% | 88.3% |
| 5owvD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 45.0 | 3.46e-01 | 91.3% | 95.9% |
| 2mtzA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.50 | 38.0 | 3.56e-01 | 82.6% | 100.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083293 | 1.1.2.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › 3D | 0.90 | 85.0 | 8.12e-01 | 100.0% | 88.6% |
| 1567466 | 1.1.2.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › 3D | 0.88 | 77.0 | 6.48e-01 | 92.4% | 65.1% |
| 4623574 | 1.1.2.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › 3D | 0.86 | 81.0 | 7.82e-01 | 100.0% | 94.0% |
| 3282133 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 79.0 | 6.17e-01 | 98.9% | 98.9% |
| 4116949 | 1.1.2.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › 3D | 0.82 | 77.0 | 5.73e-01 | 100.0% | 54.3% |
| 4540120 | 1.1.2.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › 3D | 0.80 | 77.0 | 5.81e-01 | 100.0% | 55.8% |
| 218540 | 1.1.2.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Cerato-platanin | 0.73 | 65.0 | 5.66e-01 | 95.7% | 87.4% |
| 3784921 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.67 | 54.0 | 5.63e-01 | 100.0% | 94.1% |
| 1883479 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.67 | 58.0 | 5.93e-01 | 100.0% | 95.6% |
| 4986590 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 55.0 | 5.75e-01 | 96.7% | 95.3% |
| 5074983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 57.0 | 5.80e-01 | 100.0% | 93.3% |
| 4931749 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 55.0 | 5.78e-01 | 96.7% | 96.5% |
| 5055583 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 55.0 | 5.77e-01 | 96.7% | 97.6% |
| 3735360 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 59.0 | 5.58e-01 | 100.0% | 93.6% |
| 3688059 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 59.0 | 4.83e-01 | 100.0% | 77.0% |
| 4205030 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 55.0 | 5.69e-01 | 96.7% | 96.5% |
| 4200720 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 55.0 | 5.69e-01 | 96.7% | 96.5% |
| 5028227 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 55.0 | 5.75e-01 | 96.7% | 98.8% |
| 4029174 | 1.1.2.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 | 0.64 | 59.0 | 5.21e-01 | 100.0% | 73.8% |
| 3824979 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 54.0 | 5.54e-01 | 100.0% | 94.4% |
| 4412884 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 54.0 | 5.26e-01 | 92.4% | 87.0% |
| 4654643 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 53.0 | 5.23e-01 | 92.4% | 89.0% |
| 4201122 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 53.0 | 5.09e-01 | 91.3% | 86.7% |
| 4024752 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 53.0 | 5.22e-01 | 98.9% | 84.0% |
| 5060218 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 53.0 | 5.56e-01 | 96.7% | 98.8% |
| 4013955 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 57.0 | 5.13e-01 | 100.0% | 96.0% |
| 3386113 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.62 | 56.0 | 5.39e-01 | 97.8% | 93.3% |
| 3186315 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.62 | 56.0 | 5.52e-01 | 100.0% | 96.0% |
| 3605376 | 1.1.2.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 | 0.62 | 57.0 | 5.64e-01 | 100.0% | 97.9% |
| 3511798 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.62 | 49.0 | 4.73e-01 | 85.9% | 97.1% |
| 4048983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.61 | 56.0 | 5.38e-01 | 100.0% | 95.2% |
| 3169042 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.61 | 54.0 | 5.31e-01 | 98.9% | 89.0% |
| 4946077 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.61 | 56.0 | 4.59e-01 | 100.0% | 96.2% |
| 4027672 | 1.1.2.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 | 0.61 | 55.0 | 5.28e-01 | 100.0% | 88.6% |
| 4030729 | 1.1.2.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 | 0.59 | 54.0 | 5.15e-01 | 100.0% | 96.2% |
| 3677222 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.56 | 50.0 | 4.27e-01 | 100.0% | 96.0% |
| 4887355 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.55 | 45.0 | 4.13e-01 | 100.0% | 66.9% |
| 3690252 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.54 | 49.0 | 4.45e-01 | 100.0% | 79.2% |
| 4441475 | 1.1.2.12 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PTAC | 0.54 | 46.0 | 4.56e-01 | 100.0% | 89.0% |
| 3373305 | 2004.1.1.474 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 | 0.53 | 42.0 | 3.63e-01 | 90.2% | 64.4% |