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SRR1747044_scaffold_0_prodigal-single.1__X__X__00258
Bact-VirSRR1747044_scaffold_0_prodigal-single.1__X__X__00258
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-135
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kfuA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.79 | 42.0 | 3.43e-01 | 100.0% | 30.7% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.65 | 29.0 | 3.98e-01 | 86.0% | 86.0% |
| 1wiiA01 | 2.20.25.190 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 26.0 | 3.54e-01 | 93.4% | 79.0% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.59 | 36.0 | 3.91e-01 | 95.9% | 71.8% |
| 2dfkC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 33.0 | 3.14e-01 | 81.0% | 46.8% |
| 1g5hB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.57 | 43.0 | 4.50e-01 | 79.3% | 100.0% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.56 | 44.0 | 4.47e-01 | 85.1% | 94.3% |
| 1atiB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 39.0 | 4.06e-01 | 74.4% | 96.4% |
| 4nwyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 45.0 | 4.48e-01 | 91.7% | 87.5% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 39.0 | 4.14e-01 | 76.0% | 97.1% |
| 3bs1A00 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.52 | 36.0 | 3.89e-01 | 97.5% | 83.5% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.52 | 39.0 | 4.01e-01 | 87.6% | 84.1% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 39.0 | 4.09e-01 | 86.0% | 87.5% |
| 6whjD00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 43.0 | 3.28e-01 | 100.0% | 37.4% |
| 6aikB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.51 | 35.0 | 2.64e-01 | 70.2% | 81.2% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.50 | 35.0 | 3.61e-01 | 98.3% | 75.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003371 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.65 | 31.0 | 3.59e-01 | 81.8% | 61.2% |
| 3802258 | 226.1.1.20 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 | 0.63 | 36.0 | 3.19e-01 | 79.3% | 39.4% |
| 3926509 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.60 | 44.0 | 3.39e-01 | 75.2% | 87.2% |
| 3809440 | 226.1.1.20 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 | 0.60 | 35.0 | 3.49e-01 | 72.7% | 55.2% |
| 5069147 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.60 | 46.0 | 4.68e-01 | 82.6% | 100.0% |
| 5074320 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.53 | 37.0 | 3.67e-01 | 72.7% | 92.3% |
| 4001225 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.51 | 42.0 | 2.79e-01 | 90.9% | 89.8% |
| 3703706 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 40.0 | 3.46e-01 | 86.0% | 83.0% |
| 3646226 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.51 | 25.0 | 3.09e-01 | 93.4% | 72.5% |