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SRR1747044_scaffold_0_prodigal-single.1__X__X__00268
Bact-VirSRR1747044_scaffold_0_prodigal-single.1__X__X__00268
Identity
- Kingdom:
- phage
Quality
52.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 281-334
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1njrA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.59 | 43.0 | 2.77e-01 | 77.8% | 18.5% |
| 2mgwA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 42.0 | 4.30e-01 | 100.0% | 88.5% |
| 4bofA02 | 1.10.3930.10 | Mainly Alpha › Orthogonal Bundle › Pentein › Arginine deiminase | 0.54 | 49.0 | 4.14e-01 | 100.0% | 74.7% |
| 2jp7A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 37.0 | 3.68e-01 | 77.8% | 80.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980188 | 5.1.3.119 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NANM | 0.60 | 47.0 | 2.86e-01 | 87.0% | 54.7% |
| 3297494 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.56 | 46.0 | 4.45e-01 | 92.6% | 100.0% |
D3
medium
residues 9-155
D4
medium
residues 198-265
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 38.0 | 3.90e-01 | 100.0% | 65.6% |
| 1ng2A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 37.0 | 4.48e-01 | 100.0% | 97.7% |
| 2ke9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 38.0 | 3.85e-01 | 70.6% | 65.7% |
| 5tk2B00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 48.0 | 4.50e-01 | 94.1% | 80.7% |
| 5fubA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.59 | 48.0 | 3.55e-01 | 91.2% | 87.7% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 49.0 | 4.33e-01 | 100.0% | 94.5% |
| 5gviA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 42.0 | 2.75e-01 | 79.4% | 66.0% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 47.0 | 3.83e-01 | 94.1% | 47.0% |
| 1ibyA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 46.0 | 4.04e-01 | 95.6% | 83.0% |
| 4pzaB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.57 | 46.0 | 3.45e-01 | 100.0% | 74.7% |
| 1x8mA01 | 2.60.120.520 | Mainly Beta › Sandwich › Jelly Rolls › pectin degrading enzyme 5-keto 4- deoxyuronate isomerase, domain 1 | 0.57 | 47.0 | 4.04e-01 | 98.5% | 80.3% |
| 2azpA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 47.0 | 3.62e-01 | 94.1% | 45.9% |
| 5c33A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.56 | 43.0 | 3.31e-01 | 88.2% | 63.3% |
| 1nnhA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 49.0 | 3.22e-01 | 100.0% | 80.2% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 48.0 | 3.95e-01 | 100.0% | 84.2% |
| 1sefA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.84e-01 | 98.5% | 76.5% |
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 40.0 | 3.46e-01 | 91.2% | 53.3% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 37.0 | 3.26e-01 | 77.9% | 89.1% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.28e-01 | 97.1% | 79.0% |
| 1m56B02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.51 | 40.0 | 3.28e-01 | 94.1% | 75.8% |
| 1winA01 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.51 | 36.0 | 3.02e-01 | 75.0% | 90.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269834 | 220.1.1.95 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH | 0.59 | 35.0 | 2.90e-01 | 70.6% | 32.8% |
| 4957376 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.58 | 49.0 | 3.60e-01 | 100.0% | 62.9% |
| 3945924 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.57 | 48.0 | 3.52e-01 | 98.5% | 51.9% |
| 4007792 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.57 | 40.0 | 3.24e-01 | 75.0% | 59.3% |
| 1243672 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.57 | 45.0 | 4.20e-01 | 95.6% | 74.0% |
| 4561709 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.56 | 48.0 | 4.45e-01 | 98.5% | 100.0% |
| 3268335 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.56 | 47.0 | 4.27e-01 | 95.6% | 74.5% |
| 3510522 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.56 | 39.0 | 2.98e-01 | 73.5% | 95.7% |
| 3923675 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.56 | 37.0 | 3.84e-01 | 72.1% | 72.3% |
| 5004655 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.56 | 43.0 | 3.44e-01 | 88.2% | 41.4% |
| 4936660 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.55 | 37.0 | 4.05e-01 | 70.6% | 85.5% |
| 4965857 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.53 | 36.0 | 3.68e-01 | 72.1% | 98.6% |
| 4941973 | 314.1.1.4 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2c | 0.51 | 43.0 | 2.66e-01 | 100.0% | 34.8% |
| 3216794 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 33.0 | 3.92e-01 | 73.5% | 100.0% |
| 3809323 | 59.1.3.4 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › PF28635 | 0.50 | 41.0 | 3.47e-01 | 89.7% | 63.5% |
D5
medium
residues 738-812