←Back to structures
SRR1747044_scaffold_0_prodigal-single.1__X__X__00327
Bact-VirSRR1747044_scaffold_0_prodigal-single.1__X__X__00327
Identity
- Kingdom:
- phage
Quality
61.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-146
D2
medium
residues 203-374
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00038__D86-218
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13328.13 best | HD_4 | 44.3 | 2.20e-11 | 79.7% | 80.1% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.86 | 77.0 | 7.43e-01 | 92.4% | 92.0% |
| 3nqwA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.85 | 79.0 | 7.84e-01 | 96.5% | 94.9% |
| 7smgD00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.84 | 67.0 | 7.37e-01 | 86.0% | 99.3% |
| 1vj7B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.79 | 73.0 | 7.33e-01 | 98.8% | 94.8% |
| 4mlmA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.71 | 51.0 | 4.93e-01 | 72.7% | 86.7% |
| 1tazA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.68 | 63.0 | 5.09e-01 | 100.0% | 93.2% |
| 3tm8B00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.62 | 57.0 | 4.63e-01 | 98.8% | 95.4% |
| 5jfqB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 50.0 | 4.20e-01 | 98.8% | 98.4% |
| 5vjcA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.55 | 39.0 | 3.43e-01 | 91.9% | 48.9% |
| 1ug3A01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 36.0 | 3.45e-01 | 91.3% | 57.9% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 29.0 | 3.40e-01 | 88.4% | 72.3% |
| 7dvqK01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 38.0 | 3.88e-01 | 91.3% | 74.0% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.53 | 29.0 | 3.76e-01 | 79.7% | 95.7% |
| 1oyzA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 42.0 | 3.63e-01 | 99.4% | 53.8% |
| 4mhfA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.52 | 37.0 | 3.12e-01 | 73.3% | 82.4% |
| 2qk1A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 36.0 | 3.27e-01 | 80.2% | 51.9% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 4.25e-01 | 91.9% | 83.9% |
| 3wozB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 38.0 | 3.51e-01 | 91.9% | 59.0% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.50 | 38.0 | 3.97e-01 | 95.3% | 85.9% |
| 2hr2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 36.0 | 3.80e-01 | 98.8% | 80.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038603 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.88 | 80.0 | 7.43e-01 | 94.8% | 89.4% |
| 3265073 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.87 | 79.0 | 7.44e-01 | 93.6% | 82.5% |
| 4606782 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.86 | 79.0 | 7.87e-01 | 94.2% | 92.6% |
| 3584809 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.86 | 79.0 | 7.53e-01 | 94.8% | 87.0% |
| 3386161 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.84 | 81.0 | 7.54e-01 | 100.0% | 90.2% |
| 3668020 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.83 | 80.0 | 7.45e-01 | 100.0% | 92.7% |
| 3665874 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.82 | 79.0 | 7.19e-01 | 99.4% | 92.6% |
| 3973478 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.82 | 75.0 | 7.39e-01 | 94.8% | 93.3% |
| 1503542 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.82 | 65.0 | 6.84e-01 | 82.0% | 94.9% |
| 3683167 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.81 | 78.0 | 7.48e-01 | 100.0% | 96.8% |
| 4215090 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.81 | 77.0 | 7.19e-01 | 100.0% | 92.7% |
| 3964980 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.80 | 75.0 | 7.13e-01 | 100.0% | 97.0% |
| 3974149 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.78 | 74.0 | 6.94e-01 | 100.0% | 95.6% |
| 2998334 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.77 | 74.0 | 7.23e-01 | 100.0% | 94.5% |
| 3513291 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.76 | 72.0 | 6.82e-01 | 100.0% | 95.5% |
| 3961396 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.75 | 71.0 | 6.88e-01 | 99.4% | 90.5% |
| 3459252 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.75 | 69.0 | 6.48e-01 | 98.3% | 92.2% |
| 3628487 | 109.4.1.1154 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS7_N | 0.56 | 41.0 | 3.75e-01 | 91.3% | 57.3% |
| 3668878 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 38.0 | 3.40e-01 | 88.4% | 51.8% |
| 3491680 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 2.72e-01 | 92.4% | 23.7% |