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SRR1747045_scaffold_1_prodigal-single.1__X__X__00027
Bact-VirSRR1747045_scaffold_1_prodigal-single.1__X__X__00027
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-67
D2
high
residues 84-190
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14301.13 best | DUF4376 | 39.2 | 1.20e-09 | 100.0% | 85.9% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 57.0 | 5.68e-01 | 95.3% | 79.8% |
| 2c0uA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 53.0 | 4.48e-01 | 100.0% | 49.1% |
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 37.0 | 3.85e-01 | 88.8% | 60.2% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.65 | 37.0 | 4.15e-01 | 100.0% | 72.5% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.65 | 37.0 | 4.12e-01 | 98.1% | 70.6% |
| 5ziyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.63 | 54.0 | 4.44e-01 | 94.4% | 92.8% |
| 2phcB01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.60 | 36.0 | 4.08e-01 | 81.3% | 77.1% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 49.0 | 5.04e-01 | 95.3% | 90.3% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.60 | 37.0 | 4.45e-01 | 93.5% | 100.0% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 4.27e-01 | 85.0% | 71.4% |
| 3lq9A00 | 3.90.470.40 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › RTP801-like | 0.60 | 33.0 | 3.14e-01 | 100.0% | 43.8% |
| 1sj7C00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.59 | 43.0 | 3.72e-01 | 100.0% | 48.8% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 34.0 | 3.59e-01 | 80.4% | 62.9% |
| 4qxdA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 34.0 | 3.03e-01 | 86.0% | 39.2% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 48.0 | 4.35e-01 | 91.6% | 81.5% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 33.0 | 3.46e-01 | 74.8% | 63.3% |
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 34.0 | 3.17e-01 | 82.2% | 47.4% |
| 1xp8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.54 | 28.0 | 3.47e-01 | 81.3% | 83.3% |
| 2qmaA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 31.0 | 2.97e-01 | 75.7% | 48.8% |
| 4oloB00 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.54 | 29.0 | 3.29e-01 | 76.6% | 66.7% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 29.0 | 3.59e-01 | 70.1% | 83.8% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.98e-01 | 86.9% | 75.9% |
| 4flnA02 | 3.20.190.20 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › | 0.53 | 37.0 | 3.35e-01 | 72.0% | 93.4% |
| 3u4qA02 | 1.10.274.50 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.53 | 45.0 | 3.99e-01 | 91.6% | 80.7% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.51 | 30.0 | 3.46e-01 | 86.0% | 84.5% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 42.0 | 3.72e-01 | 93.5% | 83.1% |
| 2ixtA00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.50 | 36.0 | 2.64e-01 | 74.8% | 80.3% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.66e-01 | 86.9% | 78.8% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.50 | 36.0 | 3.09e-01 | 76.6% | 76.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3933404 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.80 | 62.0 | 5.51e-01 | 94.4% | 58.7% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.79 | 74.0 | 7.01e-01 | 100.0% | 91.1% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.78 | 58.0 | 6.29e-01 | 91.6% | 92.2% |
| 3979390 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.77 | 70.0 | 6.66e-01 | 100.0% | 86.4% |
| 3630462 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.77 | 61.0 | 5.54e-01 | 95.3% | 63.6% |
| 4410759 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.76 | 58.0 | 5.73e-01 | 94.4% | 74.8% |
| 5060418 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.75 | 58.0 | 5.55e-01 | 94.4% | 71.7% |
| 3482328 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.75 | 58.0 | 5.93e-01 | 95.3% | 82.9% |
| 3939311 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.75 | 58.0 | 5.78e-01 | 94.4% | 79.1% |
| 3493963 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.74 | 56.0 | 5.77e-01 | 94.4% | 84.0% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.73 | 57.0 | 5.61e-01 | 94.4% | 76.5% |
| 3790375 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.73 | 59.0 | 5.59e-01 | 95.3% | 73.6% |
| 3506058 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.72 | 59.0 | 6.10e-01 | 94.4% | 93.0% |
| 3790743 | 109.4.1.1303 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C | 0.72 | 38.0 | 2.38e-01 | 82.2% | 9.8% |
| 3771989 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.72 | 58.0 | 5.35e-01 | 95.3% | 68.1% |
| 4943088 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.70 | 51.0 | 4.50e-01 | 92.5% | 54.0% |
| 3718200 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 55.0 | 5.21e-01 | 94.4% | 73.6% |
| 3931606 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.67 | 53.0 | 5.20e-01 | 95.3% | 78.3% |
| 3249252 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.67 | 51.0 | 3.57e-01 | 100.0% | 26.1% |
| 2409293 | 601.51.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › Flagellin_N | 0.66 | 57.0 | 4.67e-01 | 94.4% | 89.2% |
| 3974474 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 40.0 | 4.32e-01 | 81.3% | 72.2% |
| 3970671 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 40.0 | 4.56e-01 | 81.3% | 86.7% |
| 3409703 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.64 | 56.0 | 5.25e-01 | 94.4% | 83.8% |
| 3501531 | 3016.1.1.4 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC | 0.64 | 41.0 | 3.90e-01 | 88.8% | 54.3% |
| 4403516 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.64 | 56.0 | 5.30e-01 | 94.4% | 88.7% |
| 4944224 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.63 | 36.0 | 2.91e-01 | 86.9% | 27.4% |
| 3933689 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.62 | 46.0 | 3.29e-01 | 100.0% | 27.3% |
| 3967370 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.61 | 52.0 | 4.50e-01 | 90.7% | 71.9% |
| 3873955 | 7016.1.1.0 ↗ | extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain | 0.61 | 50.0 | 4.40e-01 | 91.6% | 61.3% |
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.61 | 48.0 | 4.54e-01 | 100.0% | 70.0% |
| 3516432 | 604.29.1.1 ↗ | alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N | 0.60 | 37.0 | 3.76e-01 | 88.8% | 61.0% |
| 5041715 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 51.0 | 5.14e-01 | 94.4% | 92.7% |
| 4033043 | 616.1.1.41 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 | 0.58 | 39.0 | 4.24e-01 | 85.0% | 81.1% |
| 3749051 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.58 | 51.0 | 3.89e-01 | 98.1% | 40.4% |
| 3928370 | 5001.1.1.69 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srd | 0.58 | 48.0 | 3.56e-01 | 91.6% | 84.2% |
| 4627664 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.57 | 49.0 | 3.45e-01 | 93.5% | 44.9% |
| 3274839 | 5001.1.1.32 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a | 0.56 | 47.0 | 3.50e-01 | 100.0% | 36.3% |
| 4115648 | 3671.1.1.1 ↗ | alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Tir_receptor_M | 0.56 | 42.0 | 4.66e-01 | 88.8% | 97.6% |
| 3587282 | 142.1.1.10 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 | 0.55 | 33.0 | 3.95e-01 | 95.3% | 90.0% |
| 4441223 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.54 | 39.0 | 3.50e-01 | 74.8% | 96.0% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.54 | 47.0 | 3.62e-01 | 100.0% | 44.4% |
| 3373766 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.53 | 37.0 | 3.37e-01 | 72.9% | 94.7% |
| 3249313 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.52 | 38.0 | 3.41e-01 | 75.7% | 94.0% |
| 4400946 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 39.0 | 3.55e-01 | 80.4% | 99.3% |
| 5074119 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.50 | 41.0 | 3.14e-01 | 86.0% | 98.7% |
| 167429 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.50 | 40.0 | 3.66e-01 | 86.9% | 78.8% |