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SRR1747045_scaffold_1_prodigal-single.1__X__X__00059

Bact-Vir

SRR1747045_scaffold_1_prodigal-single.1__X__X__00059

Identity

Kingdom:
phage

Quality

67.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 97-201
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.77 67.0 6.98e-01 98.1% 100.0%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 49.0 5.36e-01 94.3% 100.0%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 36.0 4.09e-01 92.4% 73.1%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 45.0 4.61e-01 83.8% 76.0%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 4.00e-01 89.5% 83.2%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 53.0 5.17e-01 98.1% 90.6%
1uhvA01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.59 53.0 4.66e-01 100.0% 79.5%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 46.0 5.00e-01 97.1% 100.0%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 52.0 4.85e-01 99.0% 91.7%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 4.83e-01 92.4% 96.6%
2gqqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.58 28.0 3.12e-01 83.8% 56.5%
3k1dA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 51.0 5.18e-01 100.0% 100.0%
5l77A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 52.0 4.79e-01 100.0% 85.0%
1gxeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.14e-01 83.8% 89.2%
1jv2A04 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.56 48.0 3.93e-01 92.4% 69.1%
2e4tA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 49.0 4.69e-01 98.1% 91.7%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 4.28e-01 81.0% 88.0%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.93e-01 92.4% 65.0%
2nykA02 2.60.40.2530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 35.0 3.74e-01 99.0% 77.0%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 43.0 4.51e-01 96.2% 97.8%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 49.0 3.57e-01 100.0% 45.4%
3nreA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 43.0 3.21e-01 88.6% 67.4%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.18e-01 83.8% 90.1%
7ekdA01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.54 48.0 3.36e-01 98.1% 58.4%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.54 43.0 4.29e-01 92.4% 83.0%
3rnsA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 4.49e-01 93.3% 92.0%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 35.0 3.79e-01 100.0% 78.9%
2w59B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 4.05e-01 83.8% 86.8%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 4.13e-01 82.9% 87.6%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 4.57e-01 100.0% 95.2%
2y0oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 3.83e-01 93.3% 77.8%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 4.11e-01 87.6% 88.3%
3k94A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.52 47.0 3.73e-01 100.0% 93.9%
3d85D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.15e-01 93.3% 84.9%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.91e-01 86.7% 87.5%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 4.09e-01 94.3% 85.6%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 4.04e-01 79.0% 93.2%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.01e-01 84.8% 88.6%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 4.52e-01 100.0% 93.5%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 4.01e-01 82.9% 91.1%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 46.0 3.72e-01 100.0% 73.1%
3so5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.12e-01 86.7% 87.6%
3ihkA00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.51 46.0 3.68e-01 100.0% 93.7%
3o14A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.38e-01 100.0% 43.7%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.50 40.0 3.81e-01 84.8% 73.2%
1c16A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.91e-01 83.8% 86.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934579 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.80 57.0 5.11e-01 94.3% 55.0%
4934511 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.79 57.0 5.09e-01 93.3% 54.5%
4004318 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.78 65.0 6.24e-01 98.1% 77.5%
3964117 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.78 67.0 7.01e-01 97.1% 100.0%
1839945 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.77 67.0 7.02e-01 100.0% 100.0%
3973699 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.75 71.0 6.81e-01 100.0% 98.3%
3604637 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.74 69.0 6.67e-01 99.0% 88.7%
5053995 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.71 47.0 5.40e-01 92.4% 93.3%
3602447 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.65 52.0 4.42e-01 93.3% 52.4%
4926998 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 47.0 4.54e-01 92.4% 68.3%
5005058 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.63 50.0 4.10e-01 93.3% 45.6%
1823836 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 53.0 5.21e-01 97.1% 85.0%
5022769 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 54.0 5.27e-01 92.4% 92.9%
2995199 10.2.1.41 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.62 49.0 4.07e-01 84.8% 90.4%
4996908 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.62 33.0 3.57e-01 84.8% 61.4%
4961583 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 55.0 5.15e-01 100.0% 89.2%
4083708 12.1.1.4 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-L-AF_C 0.60 54.0 5.02e-01 98.1% 89.2%
5051004 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 50.0 5.25e-01 100.0% 100.0%
3484176 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 49.0 5.14e-01 100.0% 100.0%
4663348 12.1.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_39 0.60 53.0 4.67e-01 100.0% 76.7%
3759752 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 39.0 3.95e-01 92.4% 66.7%
5074211 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 53.0 5.09e-01 100.0% 98.4%
4990899 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.59 46.0 4.46e-01 81.9% 100.0%
5036913 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 45.0 4.79e-01 92.4% 94.4%
4017301 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 51.0 4.89e-01 97.1% 92.0%
4528208 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 42.0 4.73e-01 84.8% 100.0%
4401582 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.58 52.0 5.15e-01 100.0% 99.1%
3353112 12.1.1.35 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.58 46.0 4.94e-01 97.1% 100.0%
2731314 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.58 40.0 4.25e-01 83.8% 84.3%
1239811 12.1.1.26 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_79C 0.57 52.0 4.97e-01 100.0% 91.9%
4161852 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.57 51.0 4.94e-01 100.0% 92.5%
3879161 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 2.53e-01 92.4% 16.0%
4003995 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 49.0 4.35e-01 96.2% 80.7%
5077072 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.56 45.0 4.41e-01 86.7% 97.4%
3247075 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 38.0 3.82e-01 92.4% 68.2%
4081949 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.56 49.0 4.91e-01 99.0% 100.0%
4639125 12.5.1.2 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.55 47.0 3.84e-01 93.3% 63.7%
4981611 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 46.0 4.32e-01 92.4% 76.2%
3763238 12.1.1.32 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_2_C 0.54 45.0 4.51e-01 100.0% 89.5%
3240730 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 43.0 3.70e-01 84.8% 55.2%
151347 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.54 41.0 4.03e-01 82.9% 79.5%
4035992 12.3.1.14 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.54 43.0 3.34e-01 88.6% 59.2%
3934401 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.45e-01 93.3% 61.8%
3214341 10.32.1.207 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ELAPOR1-like_3rd 0.53 46.0 3.97e-01 96.2% 87.9%
3872070 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.53 42.0 3.99e-01 85.7% 77.6%
3923894 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.98e-01 95.2% 81.0%
135454 10.12.1.35 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp 0.53 45.0 4.57e-01 100.0% 95.2%
3508568 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 39.0 3.93e-01 78.1% 80.0%
3177320 10.32.1.28 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.52 46.0 3.99e-01 97.1% 85.5%
4243552 12.1.1.35 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.52 44.0 4.50e-01 100.0% 96.0%
4623517 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.99e-01 91.4% 84.0%
3934460 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.99e-01 87.6% 81.0%
3881344 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.52 37.0 4.00e-01 81.0% 87.8%
3933040 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.60e-01 81.0% 76.4%
3874965 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 40.0 4.03e-01 83.8% 87.6%
3992051 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 38.0 3.83e-01 88.6% 78.1%
3930694 10.32.1.20 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA 0.51 43.0 3.73e-01 96.2% 84.1%
3864149 11.1.1.805 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.50 38.0 3.47e-01 81.0% 70.0%
4024071 10.32.1.17 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.50 43.0 3.62e-01 98.1% 75.8%
D2 medium residues 17-93
PDB