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SRR1747045_scaffold_1_prodigal-single.1__X__X__00072
Bact-VirSRR1747045_scaffold_1_prodigal-single.1__X__X__00072
Identity
- Kingdom:
- phage
Quality
31.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-69
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18454.8 best | Mtd_N | 37.4 | 2.70e-09 | 60.3% | 94.6% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.92 | 69.0 | 7.70e-01 | 77.8% | 96.1% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.75 | 52.0 | 5.54e-01 | 73.0% | 85.5% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 46.0 | 3.93e-01 | 74.6% | 56.5% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.65 | 47.0 | 3.90e-01 | 77.8% | 51.8% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.64 | 44.0 | 3.44e-01 | 73.0% | 69.9% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 48.0 | 4.04e-01 | 85.7% | 87.0% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 42.0 | 3.24e-01 | 74.6% | 49.3% |
| 3ot2A00 | 3.90.1570.10 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A | 0.59 | 42.0 | 3.13e-01 | 77.8% | 65.4% |
| 4gnxC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 41.0 | 3.10e-01 | 77.8% | 88.5% |
| 3c1yA01 | 3.40.1700.10 | Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain | 0.56 | 38.0 | 3.02e-01 | 71.4% | 56.5% |
| 1cdwA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.55 | 37.0 | 3.43e-01 | 71.4% | 95.3% |
| 3apqA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 38.0 | 3.22e-01 | 77.8% | 81.0% |
| 2ymuA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 37.0 | 2.52e-01 | 77.8% | 57.4% |
| 4dzoA02 | 3.30.457.60 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.51 | 39.0 | 3.67e-01 | 82.5% | 72.7% |
| 1i2dA02 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.50 | 39.0 | 3.02e-01 | 96.8% | 81.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.92 | 69.0 | 7.77e-01 | 77.8% | 98.0% |
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.82 | 57.0 | 6.29e-01 | 73.0% | 100.0% |
| 2905173 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.80 | 56.0 | 5.92e-01 | 73.0% | 92.6% |
| 5081065 | 3761.1.1.5 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › PF26696 | 0.74 | 50.0 | 5.74e-01 | 73.0% | 100.0% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.70 | 47.0 | 5.36e-01 | 73.0% | 97.8% |
| 3938632 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.65 | 47.0 | 4.03e-01 | 76.2% | 60.0% |
| 3649973 | 5.1.4.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 | 0.62 | 42.0 | 2.59e-01 | 71.4% | 92.6% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.60 | 48.0 | 2.88e-01 | 85.7% | 11.9% |
| 3982481 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.60 | 44.0 | 4.43e-01 | 79.4% | 90.8% |
| 3248042 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.59 | 41.0 | 3.01e-01 | 73.0% | 45.6% |
| 3533131 | 5.1.5.114 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NWD2_C | 0.59 | 44.0 | 2.78e-01 | 82.5% | 95.3% |
| 4331745 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.57 | 44.0 | 3.46e-01 | 87.3% | 49.7% |
| None | — | 0.57 | 43.0 | 2.72e-01 | 85.7% | 88.1% | |
| 3400799 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 40.0 | 2.65e-01 | 77.8% | 55.4% |
| 4891007 | 5.1.5.122 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_CFAP43 | 0.56 | 45.0 | 2.83e-01 | 88.9% | 94.1% |
| 4048173 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.55 | 41.0 | 3.49e-01 | 85.7% | 56.7% |
| 3930915 | 3105.1.1.4 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 | 0.55 | 39.0 | 3.03e-01 | 79.4% | 60.6% |
| 3233789 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.54 | 39.0 | 2.46e-01 | 79.4% | 59.5% |
| 4578847 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.54 | 45.0 | 2.85e-01 | 96.8% | 21.4% |
| 3940562 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.54 | 39.0 | 2.48e-01 | 77.8% | 62.2% |
| 3742684 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 40.0 | 2.53e-01 | 84.1% | 47.7% |
| 3510576 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.53 | 36.0 | 3.39e-01 | 82.5% | 56.2% |
| 3536311 | 5.1.3.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF | 0.52 | 37.0 | 2.52e-01 | 74.6% | 34.1% |
| 3837325 | 5.1.4.261 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, EIF3I | 0.52 | 36.0 | 2.32e-01 | 73.0% | 26.6% |
| 3223455 | 5.1.5.114 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NWD2_C | 0.51 | 36.0 | 2.29e-01 | 77.8% | 75.6% |
| 3942382 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.51 | 37.0 | 3.59e-01 | 93.7% | 68.0% |
D2
medium
residues 351-484
D3
medium
residues 529-586
D4
medium
residues 933-976_1000-1018
D5
medium
residues 1159-1226