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SRR1747045_scaffold_1_prodigal-single.1__X__X__00093
Bact-VirSRR1747045_scaffold_1_prodigal-single.1__X__X__00093
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-78
D2
medium
residues 82-162_270-291_392-452
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.55 | 38.0 | 4.39e-01 | 84.8% | 96.6% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 32.0 | 3.88e-01 | 77.4% | 95.4% |
| 1wteB01 | 1.10.3250.10 | Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 | 0.50 | 34.0 | 3.55e-01 | 70.7% | 74.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083373 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.73 | 68.0 | 5.74e-01 | 100.0% | 98.5% |
| 5082726 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.73 | 67.0 | 5.72e-01 | 100.0% | 97.7% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.62 | 54.0 | 4.46e-01 | 95.7% | 79.7% |
| 3989298 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.51 | 38.0 | 3.81e-01 | 76.2% | 76.4% |
D3
medium
residues 163-269
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 35.0 | 4.44e-01 | 99.1% | 93.5% |
| 4pkfB00 | 4.10.490.20 | Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › | 0.53 | 26.0 | 3.19e-01 | 81.3% | 71.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 32.0 | 3.70e-01 | 100.0% | 88.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.79 | 46.0 | 5.90e-01 | 91.6% | 96.9% |
| 4044129 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.78 | 37.0 | 4.84e-01 | 87.9% | 81.7% |
| 4269713 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.76 | 34.0 | 4.98e-01 | 86.0% | 100.0% |
| 4249207 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.76 | 36.0 | 5.07e-01 | 86.9% | 96.0% |
| 4104506 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.74 | 34.0 | 4.81e-01 | 86.0% | 100.0% |
| 4205352 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.73 | 36.0 | 4.94e-01 | 87.9% | 98.0% |
| 4910146 | 4056.1.1.3 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Portal_Gp20 | 0.70 | 51.0 | 5.46e-01 | 100.0% | 88.0% |
| 2531595 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.70 | 34.0 | 4.52e-01 | 88.8% | 94.1% |
| 4335061 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.68 | 33.0 | 4.52e-01 | 99.1% | 98.0% |
| 4418800 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.67 | 33.0 | 4.46e-01 | 88.8% | 98.0% |
| 4224368 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.67 | 37.0 | 4.46e-01 | 88.8% | 82.9% |
| 3977478 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.63 | 55.0 | 5.70e-01 | 100.0% | 99.0% |
| 3695006 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.60 | 54.0 | 3.82e-01 | 99.1% | 48.6% |
| 5010554 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.60 | 31.0 | 3.87e-01 | 88.8% | 81.5% |
| 3925589 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 36.0 | 4.27e-01 | 86.0% | 92.9% |
| 5081122 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.58 | 51.0 | 5.32e-01 | 99.1% | 100.0% |
| 4932493 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 30.0 | 3.59e-01 | 100.0% | 81.5% |
| 2537708 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.54 | 50.0 | 4.62e-01 | 100.0% | 96.2% |
| 3026414 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.54 | 49.0 | 4.60e-01 | 98.1% | 99.2% |
| 3659149 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 34.0 | 3.47e-01 | 87.9% | 66.7% |
| 3405112 | 220.1.1.237 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › TMEM70 | 0.52 | 36.0 | 3.95e-01 | 97.2% | 85.6% |
| 3076016 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.52 | 47.0 | 4.62e-01 | 98.1% | 99.1% |
| 3110784 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.52 | 48.0 | 4.64e-01 | 100.0% | 96.7% |
| 3829476 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.52 | 32.0 | 2.76e-01 | 86.9% | 38.3% |
| 3675653 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.52 | 31.0 | 3.53e-01 | 86.9% | 84.0% |