←Back to structures
SRR1747045_scaffold_1_prodigal-single.1__X__X__00108
Bact-VirSRR1747045_scaffold_1_prodigal-single.1__X__X__00108
Identity
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-164
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.69 | 56.0 | 6.00e-01 | 88.4% | 100.0% |
| 6qelA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.67 | 57.0 | 5.91e-01 | 94.5% | 98.7% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 32.0 | 3.73e-01 | 86.6% | 73.5% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.57 | 30.0 | 3.66e-01 | 90.2% | 77.6% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 22.0 | 2.89e-01 | 81.7% | 61.1% |
| 2es9A00 | 1.20.1290.30 | Mainly Alpha › Up-down Bundle › AhpD-like › | 0.50 | 30.0 | 3.62e-01 | 92.1% | 94.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3947982 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.87 | 76.0 | 7.99e-01 | 93.3% | 100.0% |
| 4973693 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.73 | 62.0 | 6.26e-01 | 91.5% | 97.6% |
| 4194684 | 507.1.1.6 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB_C | 0.72 | 63.0 | 4.44e-01 | 92.1% | 33.5% |
| 4548850 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 62.0 | 4.55e-01 | 97.6% | 36.5% |
| 4311479 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.70 | 62.0 | 6.21e-01 | 97.0% | 94.5% |
| 4522132 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 62.0 | 4.46e-01 | 97.0% | 34.5% |
| 1166510 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.68 | 59.0 | 5.91e-01 | 95.7% | 90.0% |
| 2979225 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.68 | 62.0 | 6.08e-01 | 98.2% | 91.5% |
| 4214084 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.68 | 61.0 | 4.43e-01 | 97.0% | 36.3% |
| 4506456 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.68 | 56.0 | 5.84e-01 | 89.0% | 95.3% |
| 3512713 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.66 | 55.0 | 5.79e-01 | 92.1% | 99.3% |
| 4561994 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.59 | 45.0 | 5.07e-01 | 84.8% | 100.0% |
| 4970544 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 42.0 | 3.19e-01 | 77.4% | 50.7% |
| 3782055 | 604.1.1.16 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PEX11 | 0.55 | 36.0 | 3.39e-01 | 98.2% | 53.2% |
| 3949071 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 39.0 | 2.88e-01 | 77.4% | 43.6% |
| 4979977 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.51 | 39.0 | 3.81e-01 | 93.3% | 72.4% |
| 4976483 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.50 | 41.0 | 3.88e-01 | 93.3% | 72.3% |
D2
medium
residues 205-263
Domain cluster:
rep: OM654377.1__UNY40322.1__KLEP7_gp164__00164__D132-184
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.86 | 68.0 | 5.03e-01 | 84.7% | 36.6% |
| 4lx3A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.86 | 73.0 | 5.99e-01 | 91.5% | 53.5% |
| 1zdeA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.85 | 71.0 | 5.03e-01 | 89.8% | 33.8% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.85 | 72.0 | 5.31e-01 | 91.5% | 39.0% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.62 | 45.0 | 3.51e-01 | 76.3% | 59.8% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.58 | 41.0 | 3.34e-01 | 76.3% | 82.1% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 34.0 | 3.40e-01 | 76.3% | 53.2% |
| 2fdbN00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 39.0 | 2.98e-01 | 78.0% | 77.0% |
| 5jozA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 42.0 | 2.72e-01 | 88.1% | 80.3% |
| 4qmaA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 41.0 | 3.18e-01 | 88.1% | 90.2% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.52 | 41.0 | 3.72e-01 | 96.6% | 91.1% |
| 4i8iA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 39.0 | 2.70e-01 | 89.8% | 62.5% |
| 2r6fA04 | 1.10.8.280 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like | 0.52 | 38.0 | 3.26e-01 | 86.4% | 76.3% |
| 3l8kA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 3.07e-01 | 81.4% | 100.0% |
| 4kcaA02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 41.0 | 2.54e-01 | 91.5% | 96.4% |
| 3dorA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 39.0 | 3.36e-01 | 88.1% | 93.5% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.50 | 38.0 | 3.51e-01 | 86.4% | 74.1% |
| 4zpjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 34.0 | 2.51e-01 | 71.2% | 40.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3282306 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 74.0 | 5.48e-01 | 88.1% | 40.0% |
| 4983616 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 70.0 | 4.92e-01 | 86.4% | 39.4% |
| 4992473 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.87 | 74.0 | 5.15e-01 | 91.5% | 32.9% |
| 5032319 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 71.0 | 5.15e-01 | 88.1% | 35.3% |
| 4779324 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 73.0 | 5.99e-01 | 91.5% | 53.5% |
| 4945569 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 71.0 | 5.15e-01 | 91.5% | 36.1% |
| 4998394 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 67.0 | 4.81e-01 | 84.7% | 33.5% |
| 5030499 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.84 | 70.0 | 5.14e-01 | 91.5% | 36.7% |
| 4982797 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 68.0 | 5.02e-01 | 88.1% | 36.6% |
| 4565870 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 70.0 | 5.03e-01 | 91.5% | 36.1% |
| 4999896 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.79 | 67.0 | 5.15e-01 | 91.5% | 57.6% |
| 4970868 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 60.0 | 4.69e-01 | 84.7% | 61.6% |
| 4997601 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.76 | 64.0 | 4.83e-01 | 100.0% | 39.3% |
| 3236079 | 2003.1.5.112 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF268 | 0.58 | 41.0 | 2.52e-01 | 74.6% | 78.9% |
| 3815071 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.56 | 39.0 | 2.30e-01 | 74.6% | 40.7% |
| 3610918 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.55 | 46.0 | 2.90e-01 | 94.9% | 95.2% |
| 3605664 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.54 | 44.0 | 2.80e-01 | 93.2% | 95.2% |
| 4428249 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 43.0 | 3.33e-01 | 96.6% | 40.0% |
| 3714115 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.52 | 43.0 | 2.71e-01 | 96.6% | 84.4% |
| 428210 | 3243.1.1.1 ↗ | alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD | 0.52 | 40.0 | 2.79e-01 | 88.1% | 25.7% |
| 3707311 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.51 | 40.0 | 2.73e-01 | 88.1% | 70.2% |
| 4929593 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.51 | 40.0 | 2.50e-01 | 86.4% | 86.1% |
| 3270408 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.51 | 38.0 | 2.45e-01 | 81.4% | 80.9% |
| 3587733 | 4980.1.1.0 ↗ | alpha superhelices › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 | 0.50 | 36.0 | 3.21e-01 | 78.0% | 68.9% |
D3
medium
residues 264-318
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e2tB00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.84 | 63.0 | 4.37e-01 | 100.0% | 26.0% |
| 2lcjA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.74 | 57.0 | 3.92e-01 | 100.0% | 24.9% |
| 3c9aA01 | 2.20.20.160 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.68 | 45.0 | 4.14e-01 | 70.9% | 80.3% |
| 2aj2A02 | 3.30.70.1300 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › VC0467-like domains | 0.58 | 47.0 | 4.19e-01 | 100.0% | 90.0% |
| 6ea2A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.56 | 43.0 | 3.10e-01 | 89.1% | 65.8% |
| 5k6uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.46e-01 | 81.8% | 90.0% |
| 3kmaA00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.52 | 37.0 | 3.19e-01 | 81.8% | 94.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999896 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 64.0 | 4.83e-01 | 100.0% | 36.8% |
| 4975971 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 62.0 | 4.64e-01 | 100.0% | 35.4% |
| 4944478 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.79 | 63.0 | 4.81e-01 | 100.0% | 39.2% |
| 1291738 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.78 | 64.0 | 5.02e-01 | 100.0% | 44.5% |
| 4970868 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.78 | 62.0 | 4.67e-01 | 100.0% | 37.6% |
| 4821446 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.75 | 62.0 | 4.72e-01 | 100.0% | 40.8% |
| 4978364 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.72 | 65.0 | 5.02e-01 | 100.0% | 47.0% |
| 4283619 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.68 | 62.0 | 4.68e-01 | 100.0% | 46.4% |
| 3215378 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.67 | 60.0 | 4.34e-01 | 100.0% | 38.0% |
| 3536227 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.65 | 45.0 | 3.55e-01 | 74.5% | 55.8% |
| 3789029 | 4186.1.1.0 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p | 0.58 | 43.0 | 3.66e-01 | 85.5% | 81.9% |
| 3228470 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 39.0 | 3.05e-01 | 81.8% | 61.4% |
| 3889902 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 37.0 | 3.27e-01 | 76.4% | 81.1% |
| 4240628 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.52 | 29.0 | 1.98e-01 | 85.5% | 13.2% |
| 3583716 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 38.0 | 3.28e-01 | 85.5% | 78.9% |