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SRR1747045_scaffold_22_prodigal-single.1__X__X__00086
Bact-VirSRR1747045_scaffold_22_prodigal-single.1__X__X__00086
Identity
- Kingdom:
- phage
Quality
67.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-86
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 40.0 | 4.09e-01 | 79.3% | 61.5% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 54.0 | 5.06e-01 | 97.6% | 82.5% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 38.0 | 2.66e-01 | 79.3% | 18.3% |
| 3aupD01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.61 | 42.0 | 3.27e-01 | 72.0% | 68.1% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.60 | 50.0 | 4.22e-01 | 95.1% | 72.6% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 51.0 | 3.35e-01 | 96.3% | 36.9% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 49.0 | 3.97e-01 | 95.1% | 63.3% |
| 2kxgA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 47.0 | 4.54e-01 | 96.3% | 77.9% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 47.0 | 4.13e-01 | 92.7% | 69.5% |
| 2rk9B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 34.0 | 3.04e-01 | 86.6% | 40.2% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.57 | 41.0 | 4.07e-01 | 96.3% | 71.1% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 47.0 | 3.90e-01 | 93.9% | 77.3% |
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 38.0 | 3.75e-01 | 76.8% | 63.3% |
| 4uf7B00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 47.0 | 2.99e-01 | 91.5% | 33.0% |
| 2de6A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 31.0 | 3.55e-01 | 80.5% | 74.1% |
| 3abiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 43.0 | 3.44e-01 | 84.1% | 78.0% |
| 2c4mA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.56 | 43.0 | 2.72e-01 | 82.9% | 28.6% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.07e-01 | 96.3% | 36.8% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 36.0 | 3.50e-01 | 81.7% | 59.3% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 38.0 | 3.55e-01 | 78.0% | 58.3% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.54 | 39.0 | 3.74e-01 | 96.3% | 66.3% |
| 1fuwA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 4.09e-01 | 87.8% | 79.1% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 45.0 | 2.89e-01 | 95.1% | 28.1% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.53 | 39.0 | 3.21e-01 | 91.5% | 39.4% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.96e-01 | 100.0% | 88.6% |
| 1dzaA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.52 | 42.0 | 3.78e-01 | 91.5% | 89.2% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 39.0 | 2.79e-01 | 80.5% | 31.5% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 44.0 | 3.74e-01 | 97.6% | 96.6% |
| 4dduA07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.51 | 39.0 | 3.60e-01 | 84.1% | 72.9% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 38.0 | 3.03e-01 | 81.7% | 100.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4968048 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.70 | 47.0 | 4.38e-01 | 70.7% | 83.8% |
| 3588750 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.68 | 51.0 | 5.33e-01 | 95.1% | 88.0% |
| 3492201 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.66 | 36.0 | 3.76e-01 | 97.6% | 57.3% |
| 3435224 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.63 | 46.0 | 5.07e-01 | 87.8% | 100.0% |
| 3173646 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.62 | 46.0 | 3.65e-01 | 78.0% | 55.2% |
| 3462235 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.61 | 49.0 | 4.97e-01 | 91.5% | 90.0% |
| 3220419 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.61 | 54.0 | 4.91e-01 | 98.8% | 89.1% |
| 4022690 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.61 | 42.0 | 3.47e-01 | 70.7% | 56.1% |
| 4960625 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.61 | 49.0 | 3.83e-01 | 89.0% | 97.3% |
| 3631313 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.60 | 48.0 | 3.71e-01 | 98.8% | 37.9% |
| 3936676 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 48.0 | 4.64e-01 | 91.5% | 87.4% |
| 5046475 | 2.2.1.0 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins | 0.59 | 43.0 | 3.80e-01 | 76.8% | 55.0% |
| 4990210 | 283.2.1.8 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 | 0.59 | 43.0 | 4.16e-01 | 97.6% | 67.4% |
| 3943546 | 2.1.1.136 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3577 | 0.58 | 37.0 | 3.40e-01 | 82.9% | 48.2% |
| 4013811 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.58 | 46.0 | 4.52e-01 | 100.0% | 78.9% |
| 3871082 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 40.0 | 3.31e-01 | 72.0% | 41.3% |
| 3425790 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.58 | 48.0 | 4.68e-01 | 96.3% | 86.3% |
| 3619212 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 38.0 | 2.61e-01 | 81.7% | 18.1% |
| 5017300 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.57 | 47.0 | 4.15e-01 | 90.2% | 62.5% |
| 3451025 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.57 | 48.0 | 4.57e-01 | 97.6% | 83.0% |
| 3185466 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.57 | 49.0 | 3.69e-01 | 98.8% | 39.5% |
| 3966871 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.56 | 44.0 | 3.87e-01 | 86.6% | 86.9% |
| 3707903 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 41.0 | 3.25e-01 | 79.3% | 53.9% |
| 3251381 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.56 | 39.0 | 4.20e-01 | 86.6% | 92.3% |
| 3205559 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.55 | 49.0 | 4.08e-01 | 98.8% | 56.6% |
| 4987319 | 1036.1.1.2 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 | 0.55 | 46.0 | 4.24e-01 | 98.8% | 70.9% |
| 3283095 | 4321.1.1.0 ↗ | a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region | 0.54 | 46.0 | 3.56e-01 | 98.8% | 40.7% |
| 3188394 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.54 | 48.0 | 4.23e-01 | 98.8% | 70.8% |
| 3613921 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.54 | 39.0 | 3.43e-01 | 90.2% | 49.6% |
| 3612689 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.76e-01 | 82.9% | 95.5% |
| 3901529 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.53 | 44.0 | 4.18e-01 | 87.8% | 87.4% |
| 4932637 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.53 | 39.0 | 3.85e-01 | 96.3% | 73.3% |
| 3700323 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 35.0 | 4.03e-01 | 74.4% | 100.0% |
| 3911618 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 36.0 | 2.85e-01 | 70.7% | 67.4% |
| 5000965 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.53 | 39.0 | 3.80e-01 | 93.9% | 72.2% |
| 3959925 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 38.0 | 3.59e-01 | 90.2% | 63.0% |
| 5035736 | 71.1.1.26 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 | 0.52 | 42.0 | 3.44e-01 | 92.7% | 87.1% |
| 4514345 | 274.1.1.50 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › Spore_YunB | 0.52 | 43.0 | 3.61e-01 | 93.9% | 73.1% |
| 3445416 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 43.0 | 2.85e-01 | 96.3% | 21.4% |
| 5036880 | 330.1.1.35 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer | 0.51 | 34.0 | 3.60e-01 | 75.6% | 78.6% |
| 5018714 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 35.0 | 3.89e-01 | 73.2% | 96.7% |
| 4336471 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.51 | 40.0 | 3.78e-01 | 85.4% | 75.0% |
| 3922370 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.17e-01 | 73.2% | 99.2% |
| 3996695 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.51 | 33.0 | 3.67e-01 | 84.1% | 98.2% |
| 5052132 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.50 | 40.0 | 3.72e-01 | 89.0% | 72.7% |
| 3628355 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 36.0 | 2.43e-01 | 74.4% | 47.6% |