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SRR1747045_scaffold_22_prodigal-single.1__X__X__00148
Bact-VirSRR1747045_scaffold_22_prodigal-single.1__X__X__00148
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-117
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s8kB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.72 | 58.0 | 4.34e-01 | 88.9% | 98.9% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 46.0 | 5.25e-01 | 83.3% | 100.0% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 46.0 | 5.20e-01 | 86.1% | 100.0% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 42.0 | 4.98e-01 | 72.2% | 100.0% |
| 2gzbB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.66 | 53.0 | 4.10e-01 | 88.9% | 99.4% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 45.0 | 4.34e-01 | 87.5% | 63.5% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 55.0 | 5.41e-01 | 97.2% | 93.5% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.63 | 48.0 | 4.65e-01 | 81.9% | 100.0% |
| 1sf9A02 | 2.30.30.340 | Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains | 0.63 | 44.0 | 4.92e-01 | 87.5% | 98.1% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.62 | 45.0 | 3.76e-01 | 80.6% | 73.5% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 42.0 | 3.72e-01 | 70.8% | 90.4% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.60 | 42.0 | 4.42e-01 | 73.6% | 100.0% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.60 | 51.0 | 4.16e-01 | 95.8% | 97.1% |
| 1ybiA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 48.0 | 3.90e-01 | 91.7% | 96.5% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 41.0 | 4.37e-01 | 75.0% | 100.0% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 41.0 | 4.35e-01 | 75.0% | 100.0% |
| 3isxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.57 | 44.0 | 4.15e-01 | 83.3% | 100.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 45.0 | 4.61e-01 | 90.3% | 92.9% |
| 4owkE00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 42.0 | 3.54e-01 | 84.7% | 83.1% |
| 1qxmA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 46.0 | 3.74e-01 | 94.4% | 100.0% |
| 1kutA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 39.0 | 3.26e-01 | 75.0% | 85.0% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 41.0 | 3.41e-01 | 80.6% | 97.8% |
| 8dc1A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 38.0 | 2.62e-01 | 72.2% | 24.1% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 40.0 | 3.26e-01 | 84.7% | 91.7% |
| 2vseA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 39.0 | 3.32e-01 | 84.7% | 83.2% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.53 | 36.0 | 3.91e-01 | 72.2% | 94.4% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.53 | 39.0 | 3.70e-01 | 80.6% | 97.7% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.53 | 42.0 | 3.54e-01 | 90.3% | 79.7% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 44.0 | 3.93e-01 | 93.1% | 79.6% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 42.0 | 3.87e-01 | 87.5% | 76.6% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.52 | 35.0 | 3.72e-01 | 91.7% | 83.9% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 40.0 | 3.59e-01 | 90.3% | 93.8% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 40.0 | 3.86e-01 | 90.3% | 86.0% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 36.0 | 3.27e-01 | 77.8% | 100.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590122 | 4999.1.1.1 ↗ | beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX | 0.73 | 55.0 | 5.79e-01 | 79.2% | 92.3% |
| 3537417 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 44.0 | 5.35e-01 | 70.8% | 100.0% |
| 4979962 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.70 | 48.0 | 5.07e-01 | 77.8% | 80.0% |
| 3659428 | 3556.1.1.1 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 | 0.69 | 50.0 | 4.56e-01 | 76.4% | 77.3% |
| 5029405 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.69 | 49.0 | 5.43e-01 | 79.2% | 100.0% |
| 4959192 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.68 | 49.0 | 5.16e-01 | 90.3% | 86.2% |
| 4932588 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.68 | 50.0 | 5.20e-01 | 91.7% | 87.7% |
| 5058270 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.68 | 48.0 | 5.17e-01 | 88.9% | 91.7% |
| 5076401 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.67 | 50.0 | 5.05e-01 | 91.7% | 81.4% |
| 1889033 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.67 | 57.0 | 3.87e-01 | 93.1% | 26.1% |
| 4938120 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.67 | 50.0 | 5.11e-01 | 93.1% | 82.9% |
| 4995678 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 47.0 | 5.19e-01 | 77.8% | 100.0% |
| 4423306 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.66 | 53.0 | 5.22e-01 | 84.7% | 85.3% |
| 4044269 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.66 | 54.0 | 5.50e-01 | 94.4% | 94.3% |
| 5029186 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.66 | 48.0 | 5.01e-01 | 91.7% | 87.7% |
| 4547406 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.65 | 52.0 | 5.09e-01 | 86.1% | 85.0% |
| 4060455 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.65 | 48.0 | 4.89e-01 | 93.1% | 82.9% |
| 3839369 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.65 | 52.0 | 5.01e-01 | 84.7% | 82.5% |
| 5017848 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.65 | 48.0 | 4.89e-01 | 93.1% | 82.9% |
| 4068131 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.65 | 52.0 | 4.75e-01 | 86.1% | 71.6% |
| 4549410 | 506.2.1.0 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain | 0.65 | 52.0 | 2.93e-01 | 86.1% | 7.8% |
| 4077893 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 52.0 | 3.10e-01 | 86.1% | 13.0% |
| 3926623 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.65 | 50.0 | 5.05e-01 | 84.7% | 93.2% |
| 3308604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.64 | 51.0 | 5.10e-01 | 93.1% | 84.0% |
| 3839972 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.64 | 49.0 | 4.91e-01 | 91.7% | 81.3% |
| 4339993 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.64 | 52.0 | 4.87e-01 | 88.9% | 76.7% |
| 3947085 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.64 | 47.0 | 4.78e-01 | 93.1% | 82.9% |
| 4218488 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 46.0 | 4.43e-01 | 77.8% | 82.5% |
| 4256943 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.62 | 48.0 | 3.99e-01 | 94.4% | 45.0% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.62 | 51.0 | 5.21e-01 | 90.3% | 95.7% |
| 2674741 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.59 | 42.0 | 4.71e-01 | 75.0% | 100.0% |
| 3326132 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.48e-01 | 83.3% | 89.2% |
| 3325360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 45.0 | 4.63e-01 | 94.4% | 87.0% |
| 3958137 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.09e-01 | 83.3% | 88.9% |
| 3712219 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 44.0 | 4.56e-01 | 83.3% | 96.9% |
| 3791851 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 3.81e-01 | 93.1% | 80.0% |
| 3609520 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 49.0 | 4.46e-01 | 95.8% | 97.9% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 46.0 | 4.24e-01 | 90.3% | 73.7% |
| 1293909 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.56 | 42.0 | 3.53e-01 | 84.7% | 82.5% |
| 3279818 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.54 | 40.0 | 3.27e-01 | 80.6% | 73.6% |
| 3518947 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.54 | 43.0 | 3.67e-01 | 87.5% | 90.8% |
| 3432877 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 44.0 | 4.67e-01 | 94.4% | 100.0% |
| 5052777 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.75e-01 | 83.3% | 75.7% |
| 3705541 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 45.0 | 4.08e-01 | 95.8% | 88.0% |
| 4945330 | 4294.1.1.11 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII | 0.52 | 34.0 | 3.47e-01 | 83.3% | 68.6% |
| 3914307 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 41.0 | 3.73e-01 | 91.7% | 80.0% |