←Back to structures
SRR1747046_scaffold_29_prodigal-single.1__X__X__00010
Bact-VirSRR1747046_scaffold_29_prodigal-single.1__X__X__00010
Identity
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-117
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.75 | 53.0 | 3.56e-01 | 73.9% | 94.8% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.75 | 54.0 | 3.50e-01 | 73.9% | 90.4% |
| 1mmuA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.74 | 51.0 | 3.51e-01 | 70.3% | 98.8% |
| 5jmfA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.68 | 47.0 | 3.51e-01 | 71.2% | 85.2% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 47.0 | 3.41e-01 | 71.2% | 98.3% |
| 4mmhA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 46.0 | 3.41e-01 | 70.3% | 83.8% |
| 4fnvA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 46.0 | 3.37e-01 | 70.3% | 85.8% |
| 2x9oA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.65 | 54.0 | 4.25e-01 | 91.0% | 77.7% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 45.0 | 4.17e-01 | 74.8% | 99.3% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.62 | 46.0 | 3.87e-01 | 77.5% | 99.0% |
| 1n9eA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.62 | 55.0 | 3.48e-01 | 93.7% | 88.3% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.62 | 54.0 | 3.41e-01 | 92.8% | 87.0% |
| 1jofA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 47.0 | 3.30e-01 | 82.0% | 97.8% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.60 | 42.0 | 4.18e-01 | 71.2% | 100.0% |
| 1so7A00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.60 | 45.0 | 3.21e-01 | 81.1% | 73.4% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 41.0 | 3.80e-01 | 71.2% | 68.1% |
| 1uypA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 45.0 | 3.43e-01 | 83.8% | 78.1% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.58 | 40.0 | 4.00e-01 | 71.2% | 83.6% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 40.0 | 2.99e-01 | 70.3% | 98.9% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 45.0 | 3.38e-01 | 83.8% | 90.0% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 43.0 | 3.14e-01 | 77.5% | 69.6% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.57 | 41.0 | 3.43e-01 | 73.9% | 96.9% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 42.0 | 3.05e-01 | 78.4% | 55.8% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 42.0 | 3.25e-01 | 79.3% | 63.0% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.56 | 42.0 | 3.53e-01 | 76.6% | 85.2% |
| 3pijA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 43.0 | 3.03e-01 | 82.0% | 69.0% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 45.0 | 3.98e-01 | 87.4% | 96.3% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 43.0 | 3.13e-01 | 84.7% | 91.4% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 44.0 | 3.30e-01 | 84.7% | 86.3% |
| 3gveA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 40.0 | 2.91e-01 | 76.6% | 88.9% |
| 1eurA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 48.0 | 3.38e-01 | 97.3% | 85.9% |
| 2hqsA01 | 3.40.50.10070 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain | 0.55 | 43.0 | 4.01e-01 | 84.7% | 77.5% |
| 3ir3A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 37.0 | 3.61e-01 | 70.3% | 97.6% |
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.54 | 38.0 | 3.78e-01 | 71.2% | 87.8% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 43.0 | 3.12e-01 | 86.5% | 95.9% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 41.0 | 4.13e-01 | 82.0% | 86.8% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 43.0 | 2.86e-01 | 89.2% | 28.5% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.52 | 47.0 | 3.74e-01 | 97.3% | 71.0% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 38.0 | 3.48e-01 | 77.5% | 78.7% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 40.0 | 4.11e-01 | 84.7% | 91.6% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 40.0 | 2.95e-01 | 87.4% | 71.9% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4046546 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.74 | 53.0 | 3.79e-01 | 73.9% | 98.0% |
| 4298119 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.71 | 51.0 | 3.66e-01 | 73.9% | 93.3% |
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.70 | 53.0 | 5.12e-01 | 78.4% | 91.1% |
| 3940149 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.70 | 46.0 | 5.10e-01 | 73.9% | 82.2% |
| 4660347 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.67 | 48.0 | 3.46e-01 | 73.9% | 96.1% |
| 1142002 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.66 | 46.0 | 3.44e-01 | 71.2% | 85.7% |
| 1498250 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.66 | 46.0 | 3.37e-01 | 71.2% | 85.3% |
| 5009702 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.66 | 43.0 | 4.00e-01 | 70.3% | 52.9% |
| 1839428 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.65 | 47.0 | 3.51e-01 | 74.8% | 85.3% |
| 4673651 | 5.1.4.51 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_4 | 0.65 | 51.0 | 3.40e-01 | 84.7% | 83.9% |
| 3743943 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.64 | 46.0 | 3.01e-01 | 73.0% | 34.4% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.64 | 50.0 | 5.11e-01 | 83.8% | 99.1% |
| 4318843 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.63 | 43.0 | 3.94e-01 | 70.3% | 53.1% |
| 3734383 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.63 | 46.0 | 3.18e-01 | 76.6% | 82.1% |
| 3506925 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.62 | 51.0 | 4.36e-01 | 88.3% | 90.5% |
| 3500531 | 5090.1.1.8 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF | 0.62 | 47.0 | 3.33e-01 | 80.2% | 98.8% |
| 3459135 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.62 | 45.0 | 4.52e-01 | 75.7% | 100.0% |
| 3926329 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.61 | 49.0 | 4.20e-01 | 85.6% | 91.6% |
| 3593405 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.61 | 50.0 | 4.31e-01 | 86.5% | 78.8% |
| 5033737 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.60 | 44.0 | 3.69e-01 | 75.7% | 94.1% |
| 3719349 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 47.0 | 3.16e-01 | 82.9% | 74.6% |
| 3188943 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.60 | 49.0 | 3.33e-01 | 87.4% | 91.4% |
| 3935776 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 44.0 | 3.06e-01 | 77.5% | 40.5% |
| 3706756 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.58 | 43.0 | 3.24e-01 | 78.4% | 51.3% |
| 3496930 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 48.0 | 3.64e-01 | 89.2% | 69.4% |
| 4241521 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.57 | 46.0 | 3.35e-01 | 85.6% | 98.4% |
| 3425526 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.57 | 47.0 | 3.93e-01 | 86.5% | 68.3% |
| 3225979 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 43.0 | 2.97e-01 | 79.3% | 46.8% |
| 3685544 | 5.1.5.77 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR75_1st | 0.57 | 43.0 | 3.06e-01 | 79.3% | 44.1% |
| 3619496 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 43.0 | 2.95e-01 | 78.4% | 92.1% |
| 3482199 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.57 | 43.0 | 2.77e-01 | 79.3% | 39.8% |
| 3833006 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.56 | 44.0 | 3.19e-01 | 82.9% | 53.2% |
| 3456597 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.56 | 46.0 | 3.96e-01 | 86.5% | 73.2% |
| 3707029 | 5.1.5.207 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EIPR1 | 0.56 | 39.0 | 3.28e-01 | 70.3% | 62.2% |
| 3892544 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.56 | 42.0 | 3.03e-01 | 77.5% | 76.4% |
| 3993127 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 44.0 | 2.93e-01 | 84.7% | 85.4% |
| 3399261 | 5.1.4.371 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz | 0.56 | 40.0 | 2.65e-01 | 73.9% | 27.0% |
| 3426108 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.56 | 48.0 | 3.38e-01 | 93.7% | 96.2% |
| 5009919 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 47.0 | 3.76e-01 | 91.0% | 59.3% |
| 5054267 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 42.0 | 3.23e-01 | 80.2% | 95.5% |
| 3598341 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 42.0 | 3.01e-01 | 81.1% | 99.4% |
| 3484000 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 45.0 | 2.57e-01 | 88.3% | 22.3% |
| 3939547 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 45.0 | 3.21e-01 | 89.2% | 35.8% |
| 3743052 | 5.1.4.78 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta | 0.54 | 45.0 | 3.06e-01 | 91.9% | 93.8% |
| 4653627 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.54 | 47.0 | 4.09e-01 | 93.7% | 94.5% |
| 4014168 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 42.0 | 3.11e-01 | 85.6% | 97.0% |
| 3723546 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 44.0 | 3.12e-01 | 87.4% | 91.0% |
| 3625919 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.52 | 43.0 | 3.69e-01 | 90.1% | 95.0% |
| 4459482 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.52 | 42.0 | 3.40e-01 | 87.4% | 96.3% |
| 3281592 | 331.3.1.31 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1990 | 0.52 | 38.0 | 3.43e-01 | 77.5% | 83.9% |
| 3714509 | 220.1.1.303 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26278 | 0.51 | 40.0 | 3.63e-01 | 83.8% | 71.6% |
| 3643274 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.50 | 37.0 | 3.27e-01 | 76.6% | 86.7% |