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SRR1747046_scaffold_29_prodigal-single.1__X__X__00016
Bact-VirSRR1747046_scaffold_29_prodigal-single.1__X__X__00016
Identity
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-73
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 46.0 | 3.90e-01 | 73.3% | 41.2% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 53.0 | 4.97e-01 | 100.0% | 70.9% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 47.0 | 4.20e-01 | 100.0% | 52.2% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.65 | 44.0 | 4.16e-01 | 78.3% | 58.9% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 43.0 | 4.25e-01 | 76.7% | 89.1% |
| 3ljcA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 50.0 | 3.96e-01 | 100.0% | 60.3% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 36.0 | 2.98e-01 | 70.0% | 51.3% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.54 | 44.0 | 3.14e-01 | 93.3% | 51.5% |
| 2af0A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.53 | 42.0 | 3.91e-01 | 100.0% | 67.5% |
| 6j0pA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 42.0 | 2.90e-01 | 93.3% | 72.9% |
| 2fi1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 39.0 | 3.91e-01 | 83.3% | 95.3% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 45.0 | 3.86e-01 | 100.0% | 72.3% |
| 3fajA00 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.53 | 45.0 | 3.85e-01 | 100.0% | 69.3% |
| 1zu1A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.50 | 37.0 | 3.78e-01 | 100.0% | 91.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053994 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.69 | 61.0 | 5.68e-01 | 100.0% | 85.3% |
| 4938670 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.63 | 54.0 | 5.10e-01 | 100.0% | 80.0% |
| 4609007 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.63 | 35.0 | 3.81e-01 | 81.7% | 64.0% |
| 3665122 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.62 | 42.0 | 3.96e-01 | 71.7% | 96.0% |
| 4995684 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.61 | 51.0 | 5.17e-01 | 100.0% | 96.7% |
| 2485666 | 7024.1.1.1 ↗ | a+b duplicates or obligate multimers › Dimerization domain of lysinoalanine synthase, DurN › Dimerization domain of lysinoalanine synthase, DurN › Dimerization domain of lysinoalanine synthase, DurN › DurN | 0.59 | 44.0 | 3.62e-01 | 80.0% | 78.9% |
| 4809788 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.59 | 33.0 | 3.41e-01 | 90.0% | 55.4% |
| 4202726 | 103.1.1.56 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_DHX29 | 0.58 | 42.0 | 3.97e-01 | 78.3% | 88.0% |
| 4926999 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.58 | 40.0 | 3.53e-01 | 73.3% | 91.1% |
| 3663304 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.54 | 41.0 | 4.13e-01 | 100.0% | 85.0% |
| 3174746 | 101.1.4.64 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › SRP1_TIP1 | 0.54 | 43.0 | 4.27e-01 | 90.0% | 100.0% |
| 3170022 | 191.1.1.61 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › SRP1_TIP1 | 0.54 | 43.0 | 4.26e-01 | 90.0% | 100.0% |
| 3226285 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.54 | 38.0 | 2.68e-01 | 75.0% | 60.5% |
| 3172783 | 3455.1.1.6 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › SRP1_TIP1 | 0.53 | 40.0 | 3.98e-01 | 85.0% | 96.9% |
| 4240701 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 39.0 | 3.44e-01 | 83.3% | 89.4% |
| 3788305 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 43.0 | 2.72e-01 | 95.0% | 18.7% |