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SRR1747046_scaffold_29_prodigal-single.1__X__X__00017
Bact-VirSRR1747046_scaffold_29_prodigal-single.1__X__X__00017
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-64
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qdfA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.76 | 54.0 | 5.56e-01 | 75.0% | 100.0% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.74 | 50.0 | 5.06e-01 | 70.0% | 86.4% |
| 1whmA01 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.71 | 49.0 | 4.66e-01 | 73.3% | 100.0% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.69 | 47.0 | 3.79e-01 | 71.7% | 67.8% |
| 2m9uA00 | 2.30.30.850 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 53.0 | 4.70e-01 | 85.0% | 82.0% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.69 | 55.0 | 4.54e-01 | 96.7% | 47.8% |
| 7ctpA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 49.0 | 3.96e-01 | 80.0% | 89.2% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 46.0 | 4.49e-01 | 76.7% | 78.8% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 46.0 | 3.97e-01 | 75.0% | 60.6% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 3.86e-01 | 75.0% | 52.0% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 46.0 | 3.61e-01 | 80.0% | 57.7% |
| 3fm8D03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 44.0 | 3.73e-01 | 76.7% | 81.5% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 3.75e-01 | 80.0% | 52.6% |
| 1zunB03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 44.0 | 3.67e-01 | 76.7% | 69.8% |
| 4mdwA00 | 2.30.30.1210 | Mainly Beta › Roll › SH3 type barrels. › Domain of unknown function DUF1541 | 0.61 | 51.0 | 3.90e-01 | 95.0% | 88.4% |
| 5d3xB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 44.0 | 3.49e-01 | 80.0% | 66.0% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 43.0 | 3.96e-01 | 80.0% | 86.4% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 43.0 | 4.56e-01 | 76.7% | 94.0% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.59 | 47.0 | 3.84e-01 | 91.7% | 52.0% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.59e-01 | 91.7% | 88.3% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 3.39e-01 | 78.3% | 39.7% |
| 2pn0A02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.57 | 43.0 | 3.86e-01 | 80.0% | 87.8% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 43.0 | 2.73e-01 | 83.3% | 99.7% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 39.0 | 3.42e-01 | 76.7% | 73.1% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.56 | 40.0 | 3.88e-01 | 76.7% | 100.0% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 41.0 | 3.52e-01 | 80.0% | 93.1% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 40.0 | 4.14e-01 | 78.3% | 98.2% |
| 1ft9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 47.0 | 3.77e-01 | 100.0% | 52.7% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.55 | 46.0 | 3.53e-01 | 96.7% | 83.1% |
| 3v76A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 38.0 | 3.40e-01 | 75.0% | 54.4% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 40.0 | 3.82e-01 | 81.7% | 69.9% |
| 3zn4A00 | 2.60.120.1180 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 39.0 | 3.00e-01 | 80.0% | 71.8% |
| 5ji7A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.53 | 42.0 | 3.05e-01 | 93.3% | 60.8% |
| 4k47A00 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.52 | 40.0 | 2.91e-01 | 85.0% | 99.5% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.52 | 42.0 | 3.45e-01 | 91.7% | 50.8% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.51 | 37.0 | 3.93e-01 | 78.3% | 98.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4429179 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.78 | 52.0 | 5.84e-01 | 70.0% | 97.8% |
| 3578824 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 61.0 | 5.33e-01 | 100.0% | 61.1% |
| 3854638 | 4.1.1.131 ↗ | beta barrels › SH3 › SH3 › SH3 › MLVIN_C | 0.73 | 50.0 | 4.25e-01 | 71.7% | 52.0% |
| 2756510 | 4.1.1.131 ↗ | beta barrels › SH3 › SH3 › SH3 › MLVIN_C | 0.72 | 49.0 | 4.36e-01 | 71.7% | 58.4% |
| 3408783 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.71 | 59.0 | 3.75e-01 | 91.7% | 83.7% |
| 3941320 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.69 | 62.0 | 5.75e-01 | 100.0% | 86.7% |
| 5074749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 49.0 | 4.71e-01 | 78.3% | 75.7% |
| 3570978 | 4.2.1.3 ↗ | beta barrels › SH3 › SAND › SAND › RAMA | 0.67 | 50.0 | 4.35e-01 | 78.3% | 73.3% |
| 3386335 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.67 | 55.0 | 3.50e-01 | 90.0% | 84.8% |
| 4525683 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.67 | 54.0 | 4.36e-01 | 96.7% | 45.8% |
| 3904034 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 46.0 | 4.65e-01 | 73.3% | 93.3% |
| 2772566 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.66 | 55.0 | 4.48e-01 | 100.0% | 49.1% |
| 4559371 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 5.22e-01 | 91.7% | 90.5% |
| 3382832 | 4.1.1.302 ↗ | beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O | 0.64 | 54.0 | 3.88e-01 | 96.7% | 79.4% |
| 3412833 | 220.1.1.161 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 | 0.63 | 47.0 | 3.78e-01 | 80.0% | 71.7% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.62 | 45.0 | 4.20e-01 | 80.0% | 75.0% |
| 3964944 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.62 | 52.0 | 4.02e-01 | 95.0% | 43.6% |
| 5016556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 41.0 | 3.66e-01 | 70.0% | 80.0% |
| 5041477 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.61 | 48.0 | 4.81e-01 | 96.7% | 86.7% |
| 4009281 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.61 | 48.0 | 4.07e-01 | 90.0% | 56.2% |
| 3963774 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.60 | 43.0 | 3.63e-01 | 76.7% | 71.4% |
| 224033 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.60 | 48.0 | 3.95e-01 | 90.0% | 50.9% |
| 5036621 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 44.0 | 4.56e-01 | 85.0% | 89.1% |
| 4983643 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.60 | 47.0 | 3.92e-01 | 86.7% | 59.0% |
| 3251948 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.59 | 45.0 | 4.56e-01 | 96.7% | 85.0% |
| 3970039 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.59 | 47.0 | 3.62e-01 | 90.0% | 42.9% |
| 4475754 | 4076.2.1.5 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP | 0.59 | 43.0 | 4.28e-01 | 95.0% | 75.4% |
| 4263982 | 375.1.1.302 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP | 0.58 | 43.0 | 4.46e-01 | 95.0% | 89.1% |
| 5025694 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.58 | 39.0 | 2.96e-01 | 71.7% | 55.0% |
| 5063433 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 41.0 | 4.28e-01 | 86.7% | 94.0% |
| 3672526 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 42.0 | 3.44e-01 | 83.3% | 61.6% |
| 3620613 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 39.0 | 4.27e-01 | 76.7% | 100.0% |
| 3814152 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.56 | 43.0 | 2.82e-01 | 86.7% | 99.0% |
| 5039411 | 375.1.1.12 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e | 0.56 | 43.0 | 4.29e-01 | 85.0% | 85.9% |
| 4000033 | 220.1.1.119 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th | 0.56 | 39.0 | 3.32e-01 | 78.3% | 74.8% |
| 4854090 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.55 | 47.0 | 3.64e-01 | 98.3% | 39.9% |
| 3236014 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.55 | 40.0 | 2.61e-01 | 80.0% | 92.0% |
| 3881976 | 375.1.1.142 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › VCIP135_N | 0.54 | 45.0 | 4.39e-01 | 100.0% | 85.7% |
| 2325643 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.54 | 46.0 | 3.63e-01 | 100.0% | 51.1% |
| 5002125 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.53 | 41.0 | 4.17e-01 | 98.3% | 100.0% |
| 4026451 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.52 | 42.0 | 3.03e-01 | 93.3% | 62.1% |
| 3846046 | 221.1.1.195 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › VCIP135_N | 0.52 | 43.0 | 4.24e-01 | 98.3% | 90.8% |
| 3735520 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.51 | 40.0 | 2.79e-01 | 93.3% | 64.1% |
| 3607898 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.50 | 37.0 | 3.81e-01 | 81.7% | 90.9% |
| 3060767 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 36.0 | 3.79e-01 | 78.3% | 98.0% |