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SRR1747046_scaffold_29_prodigal-single.1__X__X__00033

Bact-Vir

SRR1747046_scaffold_29_prodigal-single.1__X__X__00033

Identity

Kingdom:
phage

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-80
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 3.96e-01 96.5% 53.4%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.66 54.0 5.35e-01 91.2% 93.3%
1kk1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 53.0 4.36e-01 93.0% 65.8%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.64 51.0 4.10e-01 89.5% 79.5%
2z4dA00 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.64 48.0 4.20e-01 86.0% 100.0%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 4.00e-01 94.7% 95.1%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.14e-01 91.2% 89.3%
2zaiA04 2.60.40.3030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 55.0 4.23e-01 100.0% 81.8%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.62 48.0 4.17e-01 89.5% 100.0%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.62 48.0 3.16e-01 89.5% 43.6%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.02e-01 93.0% 85.6%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 49.0 3.82e-01 91.2% 41.3%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 49.0 3.94e-01 89.5% 60.9%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 49.0 4.58e-01 93.0% 75.3%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.60 48.0 3.87e-01 96.5% 91.5%
3s9cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 49.0 3.97e-01 98.2% 62.5%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.02e-01 91.2% 86.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.59 46.0 4.02e-01 100.0% 54.9%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 50.0 4.10e-01 100.0% 53.1%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.88e-01 93.0% 85.3%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 46.0 4.01e-01 93.0% 54.2%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 49.0 3.55e-01 96.5% 40.2%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 45.0 4.34e-01 94.7% 93.0%
1hcnB00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.57 45.0 3.69e-01 87.7% 94.5%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.95e-01 94.7% 84.7%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 3.88e-01 96.5% 56.2%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.36e-01 77.2% 89.0%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 46.0 3.84e-01 98.2% 67.0%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.89e-01 94.7% 85.3%
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.56 44.0 3.85e-01 91.2% 68.8%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.82e-01 94.7% 82.2%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.60e-01 93.0% 66.9%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.35e-01 98.2% 93.3%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.55 47.0 3.41e-01 100.0% 51.7%
2ipqX02 2.40.10.200 Mainly Beta › Beta Barrel › Thrombin, subunit H › STY4665 C-terminal domain-like 0.54 41.0 3.76e-01 82.5% 67.5%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.63e-01 94.7% 79.5%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.37e-01 94.7% 59.2%
5cadA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 46.0 3.29e-01 100.0% 38.7%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.27e-01 100.0% 89.4%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.52 41.0 2.95e-01 93.0% 68.4%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 2.79e-01 73.7% 86.2%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.48e-01 100.0% 54.4%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.47e-01 94.7% 80.7%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.51 39.0 2.76e-01 91.2% 35.1%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.04e-01 78.9% 67.6%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 37.0 2.33e-01 80.7% 47.8%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.16e-01 75.4% 65.9%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.23e-01 100.0% 71.3%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 2.63e-01 71.9% 69.0%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 41.0 2.93e-01 91.2% 46.3%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.59e-01 98.2% 88.4%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 3.03e-01 98.2% 40.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4084879 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 59.0 5.19e-01 94.7% 75.3%
4128974 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 56.0 5.09e-01 94.7% 80.0%
5064712 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.66 56.0 4.02e-01 96.5% 90.3%
4989205 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.66 56.0 4.01e-01 98.2% 40.6%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.65 55.0 5.22e-01 98.2% 98.6%
3247329 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 4.28e-01 91.2% 75.5%
3478042 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 4.17e-01 91.2% 79.2%
3546790 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 52.0 3.85e-01 91.2% 73.5%
3743730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.10e-01 100.0% 76.0%
872 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.64 52.0 4.00e-01 94.7% 95.1%
5029082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 50.0 3.72e-01 93.0% 59.4%
3723768 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 53.0 4.68e-01 100.0% 77.8%
5021547 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.61 48.0 3.35e-01 91.2% 36.7%
4930436 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 49.0 3.99e-01 93.0% 82.6%
3474122 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.60 48.0 3.03e-01 91.2% 28.9%
3702557 3945.1.1.0 ↗ alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain 0.60 49.0 3.80e-01 93.0% 40.0%
3479394 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.72e-01 91.2% 74.8%
3406669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.35e-01 100.0% 62.0%
4003316 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.60 52.0 4.04e-01 98.2% 78.4%
3935039 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.66e-01 91.2% 77.9%
3744629 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.59 47.0 3.81e-01 93.0% 88.8%
3899494 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.67e-01 89.5% 75.4%
4938399 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.59 46.0 3.90e-01 93.0% 84.5%
3829376 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 50.0 3.82e-01 100.0% 59.3%
3739007 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 47.0 3.67e-01 93.0% 72.9%
3271265 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 44.0 3.63e-01 89.5% 85.8%
3869434 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 44.0 3.52e-01 89.5% 71.5%
4021112 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 47.0 3.14e-01 93.0% 21.6%
3577792 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.57 47.0 3.84e-01 98.2% 59.2%
170199 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 45.0 3.19e-01 96.5% 27.3%
3483323 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 47.0 3.12e-01 100.0% 41.8%
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.12e-01 100.0% 64.7%
3192440 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.93e-01 100.0% 58.2%
3569462 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 45.0 3.52e-01 93.0% 70.7%
3331651 11.1.4.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 0.56 48.0 3.62e-01 96.5% 60.0%
5046043 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 48.0 3.67e-01 96.5% 58.5%
4147907 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.55 45.0 3.50e-01 94.7% 92.9%
3448678 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 45.0 3.53e-01 100.0% 58.6%
5083482 12.1.1.22 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.55 45.0 3.84e-01 94.7% 55.8%
3190430 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.19e-01 94.7% 76.2%
3923143 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.54 43.0 2.96e-01 94.7% 69.6%
4942730 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.72e-01 91.2% 83.2%
3923782 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 43.0 3.95e-01 93.0% 70.0%
3724875 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 42.0 2.77e-01 94.7% 24.0%
4212121 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 41.0 3.34e-01 91.2% 49.6%
5026835 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 42.0 3.55e-01 93.0% 56.2%
3917042 214.1.1.7 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.53 41.0 3.26e-01 91.2% 80.0%
2095485 1.1.5.38 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C107 0.52 41.0 2.90e-01 94.7% 25.5%
5069244 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.56e-01 98.2% 59.1%
5040998 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.52 40.0 3.63e-01 93.0% 67.8%
5069729 231.1.4.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › Hydantoinase_B 0.51 39.0 3.12e-01 91.2% 90.7%
4944742 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.02e-01 84.2% 76.9%
3788569 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.41e-01 98.2% 82.4%
3609844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.04e-01 91.2% 93.3%