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SRR1747046_scaffold_29_prodigal-single.1__X__X__00076

Bact-Vir

SRR1747046_scaffold_29_prodigal-single.1__X__X__00076

Identity

Kingdom:
phage

Quality

41.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 200-260_277-329
PDB
D2 high residues 527-579
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 3.69e-01 94.3% 80.1%
3wdoA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.62e-01 77.4% 80.3%
6pvkD01 3.30.160.810 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 34.0 3.26e-01 77.4% 53.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184942 10.2.1.56 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N 0.61 48.0 3.69e-01 94.3% 80.1%
4956935 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.56 42.0 3.39e-01 83.0% 81.8%
4176403 887.1.1.1 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.53 39.0 3.10e-01 84.9% 85.6%
4978132 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 38.0 2.97e-01 83.0% 80.0%
D3 medium residues 1-179
PDB
D4 medium residues 361-421
PDB
D5 medium residues 422-510
PDB