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SRR1747046_scaffold_29_prodigal-single.1__X__X__00115

Bact-Vir

SRR1747046_scaffold_29_prodigal-single.1__X__X__00115

Identity

Kingdom:
phage

Quality

70.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-91
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.76 69.0 6.46e-01 100.0% 84.5%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 53.0 5.52e-01 87.0% 78.1%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 47.0 5.08e-01 100.0% 75.4%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.76 69.0 6.51e-01 100.0% 100.0%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.73 59.0 5.66e-01 98.6% 76.9%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.72 52.0 5.19e-01 87.0% 74.6%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.71 63.0 6.18e-01 100.0% 96.0%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 59.0 5.85e-01 98.6% 86.5%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.70 63.0 5.94e-01 100.0% 86.6%
2q2tA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 64.0 5.50e-01 100.0% 97.2%
3m7nA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 61.0 5.71e-01 100.0% 94.2%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.69 51.0 5.11e-01 89.9% 77.5%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 46.0 5.24e-01 79.7% 98.0%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 59.0 4.70e-01 100.0% 56.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 53.0 5.42e-01 91.3% 89.6%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 58.0 5.56e-01 100.0% 93.7%
1smxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 56.0 5.27e-01 98.6% 93.1%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 57.0 4.92e-01 100.0% 65.1%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 55.0 4.48e-01 100.0% 56.4%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 37.0 3.10e-01 100.0% 32.8%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 37.0 3.05e-01 98.6% 32.5%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 39.0 4.42e-01 89.9% 100.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 38.0 4.11e-01 85.5% 78.6%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 4.65e-01 100.0% 79.3%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 37.0 2.26e-01 71.0% 9.9%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.58 46.0 4.81e-01 97.1% 100.0%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 46.0 4.09e-01 94.2% 97.1%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 38.0 3.93e-01 97.1% 82.3%
2juoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 47.0 4.38e-01 100.0% 89.9%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 37.0 3.96e-01 95.7% 91.4%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 3.37e-01 100.0% 53.5%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 46.0 4.37e-01 100.0% 90.4%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.51 44.0 3.61e-01 98.6% 87.3%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 37.0 3.38e-01 82.6% 92.3%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 33.0 3.11e-01 100.0% 52.8%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 36.0 2.38e-01 78.3% 68.4%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 43.0 3.49e-01 100.0% 97.9%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953859 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 67.0 6.90e-01 98.6% 95.4%
3962096 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 67.0 5.24e-01 98.6% 45.9%
3165931 2.7.1.3 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_Mu_Gp45 0.77 71.0 6.61e-01 100.0% 81.2%
3980538 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.77 68.0 6.66e-01 97.1% 92.0%
185474 2.1.1.96 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N 0.76 69.0 6.39e-01 100.0% 95.4%
4984320 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.72 57.0 4.56e-01 91.3% 44.6%
4606649 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 64.0 6.53e-01 100.0% 98.5%
4978946 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 56.0 5.90e-01 100.0% 96.7%
3591724 2.1.1.3 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.71 63.0 6.21e-01 100.0% 94.7%
4654307 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.71 61.0 6.14e-01 95.7% 92.9%
3988584 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 55.0 4.84e-01 91.3% 58.0%
4451633 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 63.0 5.08e-01 100.0% 97.7%
3967128 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 53.0 5.33e-01 88.4% 80.0%
4983389 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.70 54.0 5.61e-01 91.3% 89.2%
4236717 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 63.0 5.16e-01 98.6% 100.0%
3592532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 62.0 5.76e-01 98.6% 84.7%
3071227 2.1.1.55 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CusF_Ec 0.69 60.0 5.34e-01 100.0% 73.0%
4237578 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 62.0 5.07e-01 98.6% 99.2%
5057705 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.68 62.0 5.64e-01 100.0% 87.8%
4646663 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 54.0 4.36e-01 91.3% 44.4%
3698598 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.68 61.0 5.68e-01 100.0% 89.4%
4190716 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 51.0 4.31e-01 89.9% 48.7%
4311691 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 60.0 4.78e-01 98.6% 90.4%
3424196 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.67 60.0 5.64e-01 100.0% 87.1%
3948546 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 55.0 4.84e-01 91.3% 62.0%
3861944 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.67 60.0 5.84e-01 98.6% 96.0%
3943796 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.66 51.0 4.91e-01 91.3% 72.5%
4623446 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 53.0 4.36e-01 91.3% 48.4%
3320905 2.1.1.265 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RRP5 0.66 58.0 5.20e-01 100.0% 74.0%
3967545 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.66 59.0 4.47e-01 100.0% 83.1%
4934074 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 59.0 5.03e-01 100.0% 64.5%
4990915 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 5.61e-01 95.7% 91.4%
3214896 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 4.98e-01 100.0% 64.5%
3973121 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 59.0 4.77e-01 100.0% 97.7%
4309833 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 59.0 4.77e-01 100.0% 97.7%
3729471 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 4.31e-01 100.0% 48.0%
4606688 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 51.0 5.04e-01 91.3% 80.0%
3403111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 5.57e-01 98.6% 92.0%
3498900 2.3.1.0 beta barrels › OB-fold › TIMP-like › TIMP-like 0.64 57.0 4.31e-01 100.0% 51.5%
4963741 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 57.0 4.66e-01 100.0% 90.4%
4497740 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.63 45.0 4.73e-01 97.1% 86.7%
5010824 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.63 53.0 4.47e-01 91.3% 73.5%
4165211 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 54.0 4.35e-01 100.0% 98.6%
3970503 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 52.0 4.26e-01 91.3% 76.0%
4998346 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 56.0 4.52e-01 100.0% 91.5%
5080202 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 56.0 4.58e-01 100.0% 94.4%
4371403 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 51.0 4.37e-01 89.9% 76.4%
4236900 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 55.0 4.48e-01 100.0% 95.3%
3319527 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.62 54.0 4.05e-01 100.0% 74.9%
4234366 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 54.0 4.49e-01 100.0% 99.2%
4944219 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.61 55.0 4.53e-01 100.0% 93.6%
3941442 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 54.0 4.41e-01 100.0% 97.7%
4079201 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 51.0 4.35e-01 92.8% 75.5%
3964664 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.60 50.0 5.12e-01 91.3% 94.1%
3969569 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 42.0 4.46e-01 98.6% 88.3%
5054141 2.14.1.0 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.59 40.0 4.41e-01 82.6% 100.0%
4073602 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 52.0 4.48e-01 100.0% 99.1%
3508175 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.58 37.0 4.20e-01 97.1% 92.0%
4492087 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.57 40.0 4.16e-01 94.2% 80.0%
4099964 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.57 40.0 4.17e-01 97.1% 81.5%
3591188 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 3.93e-01 100.0% 59.3%
4595815 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.57 40.0 4.14e-01 94.2% 80.0%
4129953 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.57 40.0 4.11e-01 94.2% 80.0%
4349950 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 40.0 4.32e-01 97.1% 86.7%
4408024 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.55 40.0 4.33e-01 97.1% 85.0%
4107506 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 38.0 3.87e-01 94.2% 78.5%
3371511 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.54 45.0 2.81e-01 94.2% 49.6%
4502878 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.53 39.0 4.09e-01 95.7% 90.0%
4625348 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.53 38.0 4.02e-01 97.1% 90.0%
3192398 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 38.0 2.28e-01 76.8% 57.3%
4211209 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 37.0 3.83e-01 97.1% 81.5%
3349428 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.52 43.0 2.73e-01 91.3% 48.6%
4039929 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 37.0 3.83e-01 94.2% 81.5%
4077485 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 37.0 3.83e-01 97.1% 83.1%
4411951 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 44.0 3.62e-01 100.0% 79.3%
3968533 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.51 44.0 3.49e-01 100.0% 68.0%
3165403 4958.1.1.0 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.50 35.0 3.62e-01 97.1% 80.0%