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SRR1747046_scaffold_29_prodigal-single.1__X__X__00228
Bact-VirSRR1747046_scaffold_29_prodigal-single.1__X__X__00228
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-95
Domain cluster:
rep: MK504444.1__QBJ03634.1__UCC3521_0096__00096__D7-98
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00216.27 best | Bac_DNA_binding | 39.5 | 7.80e-10 | 97.8% | 90.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.86 | 78.0 | 7.71e-01 | 100.0% | 92.7% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.84 | 78.0 | 7.52e-01 | 100.0% | 93.1% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.82 | 76.0 | 7.43e-01 | 100.0% | 92.8% |
| 2iieA01 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.76 | 71.0 | 6.65e-01 | 100.0% | 86.1% |
| 6lmjB00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.75 | 67.0 | 6.54e-01 | 97.8% | 94.9% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.75 | 68.0 | 6.83e-01 | 100.0% | 95.7% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.75 | 68.0 | 6.68e-01 | 100.0% | 91.9% |
| 4fmrA02 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.72 | 62.0 | 6.32e-01 | 100.0% | 94.3% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 38.0 | 3.88e-01 | 92.3% | 69.0% |
| 3k94A00 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.55 | 41.0 | 3.07e-01 | 76.9% | 52.8% |
| 1ju2A02 | 3.30.410.40 | Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › | 0.54 | 37.0 | 2.98e-01 | 72.5% | 55.8% |
| 3viqA00 | 6.10.140.1020 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 39.0 | 3.60e-01 | 80.2% | 63.9% |
| 7qu8A01 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.51 | 42.0 | 3.29e-01 | 92.3% | 72.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4284216 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.92 | 85.0 | 8.44e-01 | 100.0% | 93.7% |
| 4108127 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.91 | 85.0 | 8.37e-01 | 100.0% | 94.7% |
| 4508411 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.90 | 84.0 | 8.10e-01 | 100.0% | 89.0% |
| 4183750 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.90 | 66.0 | 7.04e-01 | 100.0% | 86.3% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.88 | 83.0 | 7.98e-01 | 100.0% | 91.0% |
| 4681823 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.86 | 81.0 | 7.79e-01 | 100.0% | 91.0% |
| 4240651 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.85 | 78.0 | 7.57e-01 | 100.0% | 89.0% |
| 5073165 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.84 | 76.0 | 7.66e-01 | 100.0% | 97.8% |
| 163570 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.84 | 78.0 | 7.52e-01 | 100.0% | 93.1% |
| 4088528 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.82 | 76.0 | 7.33e-01 | 100.0% | 92.0% |
| 4051851 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.81 | 75.0 | 7.25e-01 | 100.0% | 98.0% |
| 4227571 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.81 | 75.0 | 7.23e-01 | 100.0% | 91.0% |
| 1916727 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.75 | 68.0 | 6.68e-01 | 100.0% | 91.9% |
| 2627940 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.74 | 68.0 | 6.59e-01 | 97.8% | 93.9% |
| 1919590 | 101.17.1.2 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-DNA_bdg | 0.70 | 62.0 | 5.65e-01 | 100.0% | 72.5% |
| 4168202 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.70 | 63.0 | 6.29e-01 | 97.8% | 96.8% |
| 2909 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.61 | 54.0 | 5.26e-01 | 100.0% | 92.9% |
| 3653397 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.55 | 48.0 | 3.33e-01 | 98.9% | 90.0% |
| 3335275 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.51 | 45.0 | 3.51e-01 | 97.8% | 95.9% |