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SRR1747046_scaffold_45_prodigal-single.1__X__X__00009

Bact-Vir

SRR1747046_scaffold_45_prodigal-single.1__X__X__00009

Identity

Kingdom:
phage

Quality

73.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-140
PDB
Domain cluster: rep: pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00070__D176-276
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h7iA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 44.0 5.08e-01 97.2% 100.0%
5hmlA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.62 42.0 4.77e-01 97.2% 95.0%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 47.0 4.13e-01 83.3% 94.5%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.59 36.0 4.14e-01 91.7% 85.5%
7tvcA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.57 37.0 3.62e-01 85.2% 59.2%
3fruA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 44.0 3.75e-01 83.3% 93.8%
1ngkB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 42.0 3.99e-01 98.1% 70.9%
3mqmA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 48.0 4.56e-01 99.1% 84.9%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 46.0 4.46e-01 96.3% 85.2%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.53 37.0 3.30e-01 74.1% 51.3%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 41.0 3.95e-01 98.1% 73.2%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.52 41.0 3.81e-01 85.2% 80.4%
1yowA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 45.0 3.59e-01 100.0% 69.6%
1a52A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 45.0 3.53e-01 100.0% 69.9%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 30.0 3.09e-01 97.2% 60.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4077224 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 41.0 4.60e-01 96.3% 93.8%
4006151 3576.1.1.1 ↗ a+b complex topology › Cas8-like › Cascade subunit CasA/Cse1/Cas8 › Cascade subunit CasA/Cse1/Cas8 › CRISPR_Cse1 0.60 54.0 3.46e-01 99.1% 38.8%
4929455 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.52 41.0 3.55e-01 83.3% 60.0%
4025484 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.52 39.0 3.85e-01 98.1% 73.3%
1736827 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.51 41.0 2.90e-01 88.0% 63.3%
3424503 192.29.1.46 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1110 0.51 40.0 3.33e-01 83.3% 66.5%