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SRR1747046_scaffold_45_prodigal-single.1__X__X__00065

Bact-Vir

SRR1747046_scaffold_45_prodigal-single.1__X__X__00065

Identity

Kingdom:
phage

Quality

81.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 48.0 4.14e-01 76.3% 88.7%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.65e-01 100.0% 86.2%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 47.0 3.99e-01 76.3% 91.1%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 47.0 3.89e-01 74.6% 88.2%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.21e-01 100.0% 85.0%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.24e-01 100.0% 84.2%
7k7jA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 3.76e-01 76.3% 100.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.63 48.0 4.47e-01 100.0% 64.9%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.78e-01 74.6% 94.7%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.84e-01 74.6% 100.0%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 38.0 3.00e-01 79.7% 30.1%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 3.81e-01 94.9% 51.1%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.58 47.0 3.35e-01 94.9% 98.0%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.58 34.0 3.44e-01 83.1% 54.1%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 3.88e-01 93.2% 93.6%
1q25A03 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.57 47.0 3.56e-01 93.2% 96.6%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.57e-01 91.5% 61.6%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.55e-01 78.0% 94.8%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 45.0 2.91e-01 89.8% 85.1%
1z52A02 3.30.412.10 Alpha Beta › 2-Layer Sandwich › Proaerolysin; Chain A, domain 2 › Proaerolysin, chain A, domain 2 0.56 45.0 3.34e-01 93.2% 89.6%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 42.0 3.08e-01 81.4% 82.4%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.68e-01 94.9% 60.8%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.81e-01 91.5% 69.6%
2xfmA00 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.56 46.0 3.81e-01 98.3% 74.2%
4zj9A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 4.01e-01 94.9% 79.6%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 46.0 3.71e-01 94.9% 80.2%
4j8qA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.55 45.0 3.64e-01 91.5% 89.8%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 45.0 2.90e-01 93.2% 31.4%
5a35A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 47.0 3.91e-01 100.0% 93.8%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.55 43.0 3.26e-01 86.4% 39.0%
6ewnA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.88e-01 94.9% 77.8%
1shsA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.68e-01 94.9% 67.8%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.54 38.0 3.09e-01 78.0% 68.8%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.79e-01 91.5% 87.1%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.63e-01 86.4% 89.2%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 2.79e-01 84.7% 51.9%
3tx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 37.0 2.54e-01 79.7% 38.6%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.30e-01 93.2% 96.8%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 45.0 3.88e-01 100.0% 100.0%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.50 39.0 3.03e-01 89.8% 39.3%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 40.0 3.23e-01 88.1% 79.5%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3225056 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 61.0 4.91e-01 100.0% 63.6%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.67 52.0 4.61e-01 100.0% 58.8%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.65 57.0 5.17e-01 100.0% 76.2%
4004117 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.64 54.0 4.07e-01 96.6% 78.7%
1565067 9.23.1.2 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.63 52.0 4.16e-01 93.2% 95.0%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 54.0 4.78e-01 100.0% 67.1%
4200725 206.1.1.98 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1, APH 0.62 45.0 3.17e-01 76.3% 56.3%
3604284 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.48e-01 94.9% 88.4%
3253023 708.1.2.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP 0.62 54.0 4.00e-01 100.0% 100.0%
5038431 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.92e-01 98.3% 80.0%
3890590 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.61 51.0 3.93e-01 93.2% 94.8%
4010995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.02e-01 100.0% 88.0%
3258438 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.61 50.0 3.81e-01 93.2% 97.9%
3412152 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.61 51.0 3.97e-01 94.9% 85.9%
3921654 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.61 51.0 3.97e-01 94.9% 86.5%
3730011 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 52.0 3.91e-01 100.0% 40.0%
3220403 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.38e-01 100.0% 71.4%
3798355 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.60 49.0 3.82e-01 94.9% 82.9%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 51.0 4.70e-01 100.0% 73.8%
3574882 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.59 48.0 3.80e-01 94.9% 84.1%
3784674 220.1.1.270 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_33 0.59 49.0 3.60e-01 94.9% 74.7%
3625905 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 49.0 3.70e-01 94.9% 48.7%
5020267 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 48.0 3.79e-01 94.9% 57.8%
3503502 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.58 49.0 3.86e-01 94.9% 90.0%
3500564 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 49.0 4.09e-01 94.9% 68.6%
5076811 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.58 41.0 2.93e-01 72.9% 24.6%
3812263 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 49.0 4.01e-01 100.0% 73.3%
4168408 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 48.0 3.76e-01 94.9% 57.8%
2060726 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 47.0 3.97e-01 94.9% 70.6%
3476117 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 44.0 3.59e-01 84.7% 52.2%
3536857 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.57 47.0 3.47e-01 93.2% 79.4%
3198829 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.57 51.0 4.05e-01 100.0% 67.5%
4582428 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 47.0 3.80e-01 94.9% 62.4%
4029656 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 3.45e-01 84.7% 68.0%
4962569 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 47.0 3.61e-01 94.9% 53.1%
139998 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.57 45.0 2.91e-01 89.8% 84.9%
2978978 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 48.0 4.52e-01 100.0% 81.3%
4014854 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 46.0 2.90e-01 89.8% 82.9%
3433715 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 45.0 3.94e-01 94.9% 75.0%
3676350 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 45.0 3.81e-01 91.5% 74.3%
4953791 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.56 40.0 2.36e-01 76.3% 12.8%
5011604 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.05e-01 76.3% 67.4%
4927237 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 45.0 3.50e-01 94.9% 53.8%
5012803 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 44.0 3.49e-01 94.9% 53.1%
3250427 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 3.94e-01 100.0% 72.7%
4027383 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.55 45.0 2.76e-01 91.5% 91.8%
4054284 220.1.1.115 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.55 47.0 4.06e-01 94.9% 70.0%
2770325 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 45.0 3.81e-01 94.9% 71.7%
5028159 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 44.0 3.53e-01 94.9% 57.9%
5033186 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 44.0 3.47e-01 94.9% 53.8%
3236693 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.88e-01 93.2% 21.0%
3290541 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 43.0 4.21e-01 88.1% 81.5%
3767941 220.1.1.115 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.54 48.0 3.74e-01 100.0% 66.2%
4936979 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 43.0 3.48e-01 94.9% 59.2%
3257783 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.53 42.0 3.38e-01 91.5% 82.3%
4477076 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 42.0 3.89e-01 91.5% 91.3%
4029068 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 41.0 3.26e-01 86.4% 92.0%
3880605 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 43.0 3.82e-01 94.9% 73.3%
4961406 304.136.1.0 a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain 0.52 45.0 3.93e-01 100.0% 97.9%
3252177 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.74e-01 100.0% 82.7%
3407499 63.1.1.1 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.52 41.0 3.18e-01 89.8% 100.0%
4948770 241.6.1.2 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › ARPC4 0.51 41.0 3.43e-01 91.5% 62.7%
4181084 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.51 44.0 3.14e-01 98.3% 60.5%
4001388 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 39.0 2.61e-01 88.1% 19.0%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.51 41.0 3.94e-01 100.0% 80.0%
4581369 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.51 44.0 3.69e-01 100.0% 62.9%
3221612 12.3.1.42 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.50 38.0 2.70e-01 88.1% 34.2%
5054665 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 42.0 2.96e-01 94.9% 64.6%
863938 328.5.1.3 a+b two layers › IF3-like › SirA-like › SirA-like › Tsi1 0.50 39.0 3.03e-01 89.8% 39.3%