←Back to structures

SRR1747046_scaffold_45_prodigal-single.1__X__X__00161

Bact-Vir

SRR1747046_scaffold_45_prodigal-single.1__X__X__00161

Identity

Kingdom:
phage

Quality

92.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-66
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 60.0 5.78e-01 85.0% 73.1%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.78e-01 83.3% 77.4%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 55.0 6.03e-01 75.0% 98.0%
2fd5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 54.0 5.91e-01 73.3% 97.9%
3cdlA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 55.0 5.73e-01 75.0% 92.6%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 5.39e-01 73.3% 73.3%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.89e-01 85.0% 94.0%
1rktA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 52.0 5.43e-01 75.0% 90.6%
3g7rA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.72 53.0 3.67e-01 78.3% 27.5%
6el2B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 49.0 5.33e-01 71.7% 98.0%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 56.0 5.72e-01 85.0% 96.6%
5dajD00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.71 55.0 3.80e-01 83.3% 29.7%
3mnlB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 60.0 4.17e-01 91.7% 34.6%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.10e-01 91.7% 86.5%
2qwtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 58.0 4.18e-01 91.7% 37.1%
2fbqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 55.0 3.73e-01 88.3% 29.1%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 4.26e-01 95.0% 55.6%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 47.0 5.07e-01 86.7% 93.8%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 43.0 4.84e-01 73.3% 100.0%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 53.0 3.83e-01 100.0% 33.2%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 50.0 3.68e-01 100.0% 36.2%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.59 48.0 3.37e-01 96.7% 47.7%
3f1bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 49.0 3.61e-01 100.0% 35.0%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 43.0 4.64e-01 78.3% 100.0%
4mk6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 49.0 3.59e-01 100.0% 33.0%
2i10A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 46.0 4.64e-01 90.0% 91.7%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 43.0 4.40e-01 81.7% 86.7%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 44.0 4.19e-01 85.0% 81.7%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 46.0 3.49e-01 98.3% 37.6%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 49.0 3.48e-01 98.3% 67.9%
3dewA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 42.0 4.35e-01 85.0% 100.0%
3anpB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 45.0 3.31e-01 96.7% 31.4%
2oayA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.56 48.0 3.45e-01 100.0% 42.0%
2g5cB02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.56 47.0 3.95e-01 100.0% 58.2%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 3.28e-01 95.0% 39.5%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 39.0 3.56e-01 75.0% 57.1%
7mqvC02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.54 44.0 3.85e-01 100.0% 58.1%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 36.0 3.57e-01 70.0% 69.8%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.17e-01 98.3% 33.0%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.53 39.0 3.62e-01 81.7% 61.4%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 42.0 4.17e-01 98.3% 100.0%
3hhcC00 1.20.1250.60 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda 0.52 42.0 3.14e-01 88.3% 80.8%
1bvp101 1.10.250.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 0.52 42.0 3.53e-01 96.7% 93.3%
3ezhA00 1.20.120.960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain 0.51 42.0 3.57e-01 100.0% 88.6%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 43.0 4.04e-01 100.0% 98.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022685 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.82 62.0 6.27e-01 85.0% 80.0%
5032612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 60.0 6.23e-01 85.0% 89.1%
5032601 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.79 60.0 6.21e-01 85.0% 89.1%
5023079 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.76 57.0 5.19e-01 80.0% 62.5%
3960205 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.76 56.0 5.03e-01 76.7% 67.5%
3767621 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.75 62.0 5.70e-01 98.3% 70.0%
4055578 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 4.98e-01 98.3% 85.7%
4031837 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.74 58.0 5.34e-01 83.3% 77.3%
4966784 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 5.32e-01 80.0% 76.7%
4340989 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.73 58.0 5.37e-01 85.0% 76.0%
3164718 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 55.0 5.10e-01 85.0% 64.0%
3283805 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.73 57.0 5.38e-01 83.3% 77.1%
4943203 101.1.1.19 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.73 56.0 4.40e-01 83.3% 44.0%
4456687 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.73 57.0 4.40e-01 85.0% 43.4%
3280175 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.72 57.0 5.42e-01 85.0% 77.1%
3987741 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.72 61.0 5.50e-01 91.7% 75.0%
3966271 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 56.0 5.31e-01 85.0% 81.4%
3509240 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.71 56.0 5.52e-01 98.3% 81.5%
3961315 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.71 55.0 5.29e-01 85.0% 80.0%
3729223 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 5.17e-01 81.7% 78.3%
3288755 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.70 55.0 5.38e-01 85.0% 87.7%
3286520 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.70 60.0 5.83e-01 91.7% 92.3%
3289937 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.69 59.0 5.09e-01 91.7% 70.0%
168860 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.69 54.0 5.03e-01 85.0% 75.7%
4268334 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 5.36e-01 76.7% 100.0%
3284035 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.68 57.0 5.42e-01 91.7% 85.7%
2642659 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.68 57.0 5.21e-01 91.7% 80.8%
2538 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.68 55.0 5.03e-01 88.3% 78.5%
4036133 101.29.1.0 ↗ alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like 0.68 50.0 5.32e-01 96.7% 98.0%
4977106 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 52.0 5.13e-01 86.7% 78.5%
4982701 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.67 58.0 5.09e-01 93.3% 90.6%
3954729 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.67 57.0 5.25e-01 91.7% 80.0%
4944795 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.47e-01 91.7% 92.3%
4954539 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 5.04e-01 78.3% 92.0%
3708540 7000.1.1.2 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › RBD_LARS1 0.65 54.0 5.05e-01 93.3% 92.0%
3738604 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.68e-01 100.0% 77.1%
1247873 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.64 54.0 5.07e-01 100.0% 81.8%
5000330 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.63 56.0 5.09e-01 100.0% 98.8%
167767 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.63 53.0 4.95e-01 100.0% 81.8%
3283953 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.62 52.0 4.65e-01 100.0% 71.1%
3288981 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.61 51.0 4.69e-01 100.0% 75.3%
1103020 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.61 51.0 4.87e-01 100.0% 90.3%
2546 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.60 50.0 4.72e-01 100.0% 88.5%
3519172 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 45.0 4.75e-01 88.3% 100.0%
3287457 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.60 50.0 4.66e-01 100.0% 78.8%
2803585 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.59 48.0 4.56e-01 100.0% 75.9%
4930318 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.59 46.0 3.62e-01 86.7% 68.5%
3280043 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.58 46.0 4.44e-01 91.7% 80.0%
3960105 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.58 47.0 4.53e-01 98.3% 84.0%
3257506 101.1.1.333 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ATG29_N 0.58 44.0 4.14e-01 85.0% 69.3%
3806243 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.58 49.0 3.58e-01 100.0% 51.7%
3970046 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 4.61e-01 96.7% 95.4%
5016436 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 47.0 4.54e-01 98.3% 90.0%
137965 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 47.0 4.33e-01 100.0% 76.2%
3290890 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 47.0 4.43e-01 100.0% 80.0%
3958595 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 47.0 4.48e-01 98.3% 85.3%
3974144 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 46.0 4.43e-01 100.0% 93.3%
3925224 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.56 46.0 3.29e-01 96.7% 46.3%
3283171 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.56 46.0 4.43e-01 98.3% 85.7%
4612826 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.56 39.0 3.53e-01 75.0% 55.0%
2453128 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.56 45.0 4.22e-01 98.3% 78.8%
3280131 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.55 45.0 4.35e-01 98.3% 91.4%
3833444 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 45.0 3.75e-01 98.3% 82.5%
3576455 604.5.1.32 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TMEM120A-B 0.54 38.0 2.54e-01 83.3% 18.4%
134552 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.54 43.0 4.04e-01 98.3% 81.7%
3309615 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.54 43.0 3.01e-01 100.0% 62.7%
4670545 3711.1.1.61 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › CHD5 0.53 39.0 3.43e-01 81.7% 53.3%
4946656 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.50 39.0 3.19e-01 88.3% 43.3%