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SRR1747046_scaffold_45_prodigal-single.1__X__X__00226
Bact-VirSRR1747046_scaffold_45_prodigal-single.1__X__X__00226
Identity
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 143-248
Domain cluster:
rep: IMGVR_UViG_3300025584_000284-3300025584-Ga0209774_100031726__D151-252
D2
medium
residues 4-67
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w8mA00 | 3.40.1350.50 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif | 0.54 | 40.0 | 3.09e-01 | 82.8% | 59.4% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.52 | 40.0 | 3.18e-01 | 89.1% | 85.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 54.0 | 5.34e-01 | 90.6% | 76.8% |
| 3712524 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.71 | 54.0 | 5.68e-01 | 90.6% | 96.4% |
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.71 | 56.0 | 5.12e-01 | 92.2% | 65.5% |
| 3260588 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 47.0 | 5.29e-01 | 85.9% | 94.0% |
| 4615351 | 375.6.1.0 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like | 0.67 | 37.0 | 4.60e-01 | 89.1% | 97.1% |
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.63 | 54.0 | 4.49e-01 | 100.0% | 53.3% |
| 1281431 | 7.1.1.4 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 | 0.55 | 38.0 | 3.37e-01 | 75.0% | 53.3% |
| 4979113 | 620.1.1.6 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 | 0.53 | 42.0 | 3.19e-01 | 85.9% | 51.0% |
| 5010942 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 37.0 | 2.90e-01 | 75.0% | 86.9% |
| 3593736 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.51 | 29.0 | 2.56e-01 | 100.0% | 37.0% |
| 4965624 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.51 | 35.0 | 2.37e-01 | 71.9% | 17.8% |
| 3290648 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 37.0 | 2.83e-01 | 79.7% | 81.9% |
| 3698757 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 36.0 | 3.19e-01 | 76.6% | 72.0% |
D3
medium
residues 72-130
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hdiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.60 | 51.0 | 3.56e-01 | 94.9% | 73.2% |
| 1bccA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 43.0 | 3.09e-01 | 100.0% | 46.1% |
| 1u8xX01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 34.0 | 2.52e-01 | 71.2% | 41.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030316 | 109.4.1.1251 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_XPO7 | 0.62 | 52.0 | 2.86e-01 | 100.0% | 26.8% |
| 4854406 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.54 | 43.0 | 3.02e-01 | 93.2% | 78.5% |
| 3595794 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.52 | 45.0 | 3.06e-01 | 100.0% | 45.5% |
| 3233931 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.51 | 45.0 | 3.07e-01 | 100.0% | 65.6% |