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SRR1747046_scaffold_45_prodigal-single.1__X__X__00231
Bact-VirSRR1747046_scaffold_45_prodigal-single.1__X__X__00231
Identity
- Kingdom:
- phage
Quality
63.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-55
Domain cluster:
rep: MF158042.1__ATE86123.1__Sd1_gp57__00056__D2-50
CATH (69)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f39A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.78 | 66.0 | 5.19e-01 | 100.0% | 47.5% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 65.0 | 5.94e-01 | 100.0% | 80.6% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 63.0 | 6.22e-01 | 95.6% | 91.8% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 65.0 | 5.75e-01 | 100.0% | 86.8% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 62.0 | 5.75e-01 | 100.0% | 75.0% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 60.0 | 5.11e-01 | 100.0% | 69.9% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 62.0 | 5.56e-01 | 100.0% | 71.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 63.0 | 5.58e-01 | 100.0% | 69.7% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.73 | 63.0 | 5.01e-01 | 100.0% | 68.8% |
| 4k8wA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.72 | 61.0 | 4.59e-01 | 100.0% | 78.8% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 61.0 | 5.27e-01 | 100.0% | 80.8% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 59.0 | 4.93e-01 | 100.0% | 62.8% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.71 | 61.0 | 5.24e-01 | 100.0% | 61.6% |
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 60.0 | 5.13e-01 | 100.0% | 85.5% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 58.0 | 5.75e-01 | 97.8% | 93.6% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 57.0 | 5.67e-01 | 100.0% | 93.8% |
| 2eayB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 61.0 | 5.94e-01 | 100.0% | 91.8% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.69 | 59.0 | 5.83e-01 | 100.0% | 93.8% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 58.0 | 5.07e-01 | 100.0% | 74.3% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 56.0 | 4.67e-01 | 100.0% | 80.5% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 54.0 | 4.17e-01 | 100.0% | 65.5% |
| 4k17B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 54.0 | 4.25e-01 | 100.0% | 62.2% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.67 | 59.0 | 4.37e-01 | 100.0% | 56.4% |
| 3k2zA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.67 | 55.0 | 4.19e-01 | 100.0% | 40.3% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 55.0 | 4.97e-01 | 100.0% | 98.5% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 56.0 | 4.15e-01 | 100.0% | 59.7% |
| 1eazA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 54.0 | 4.30e-01 | 100.0% | 74.8% |
| 1plsA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 54.0 | 4.19e-01 | 100.0% | 67.3% |
| 2coaA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 54.0 | 4.12e-01 | 100.0% | 67.8% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.65 | 48.0 | 3.95e-01 | 93.3% | 44.0% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.64 | 48.0 | 4.10e-01 | 84.4% | 67.1% |
| 2elbA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 53.0 | 4.21e-01 | 100.0% | 67.6% |
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.64 | 48.0 | 3.83e-01 | 95.6% | 40.7% |
| 5u78C00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 51.0 | 3.98e-01 | 100.0% | 79.3% |
| 3i6dA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 50.0 | 3.54e-01 | 95.6% | 47.1% |
| 1jheA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.62 | 52.0 | 3.91e-01 | 100.0% | 39.5% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.61 | 47.0 | 3.14e-01 | 84.4% | 46.8% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.61 | 49.0 | 3.10e-01 | 100.0% | 16.9% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.60 | 46.0 | 4.30e-01 | 97.8% | 77.3% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 47.0 | 3.72e-01 | 100.0% | 74.4% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 46.0 | 3.78e-01 | 100.0% | 68.2% |
| 3d1cA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 48.0 | 3.75e-01 | 100.0% | 96.5% |
| 4pdyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 46.0 | 3.71e-01 | 91.1% | 77.8% |
| 3rp7A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 45.0 | 3.21e-01 | 93.3% | 43.5% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.58 | 46.0 | 3.97e-01 | 93.3% | 67.1% |
| 4bjzA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 43.0 | 3.15e-01 | 95.6% | 42.9% |
| 3f6zB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.57 | 45.0 | 3.93e-01 | 95.6% | 94.9% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.57 | 40.0 | 2.97e-01 | 80.0% | 86.3% |
| 3vzbB02 | 2.60.200.40 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 46.0 | 3.15e-01 | 100.0% | 95.9% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.56 | 46.0 | 3.55e-01 | 100.0% | 39.5% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.56 | 44.0 | 3.30e-01 | 93.3% | 67.2% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 44.0 | 3.47e-01 | 86.7% | 89.9% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.55 | 46.0 | 3.55e-01 | 100.0% | 40.5% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 46.0 | 3.49e-01 | 100.0% | 43.6% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 43.0 | 3.14e-01 | 100.0% | 39.2% |
| 4jzjC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 2.94e-01 | 71.1% | 86.5% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.55 | 46.0 | 3.12e-01 | 100.0% | 34.6% |
| 2i02A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 46.0 | 3.31e-01 | 100.0% | 35.0% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 41.0 | 2.98e-01 | 86.7% | 47.9% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 45.0 | 3.22e-01 | 100.0% | 34.0% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.53 | 41.0 | 3.77e-01 | 82.2% | 63.8% |
| 2dx0A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 44.0 | 3.35e-01 | 100.0% | 75.2% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 44.0 | 3.27e-01 | 100.0% | 38.6% |
| 2wmmA02 | 3.30.70.3500 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain | 0.52 | 39.0 | 3.04e-01 | 86.7% | 70.8% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.52 | 42.0 | 2.82e-01 | 93.3% | 67.7% |
| 7p0eA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.31e-01 | 100.0% | 42.4% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 43.0 | 3.12e-01 | 100.0% | 35.2% |
| 1bqbA01 | 3.10.170.10 | Alpha Beta › Roll › Elastase; domain 1 › | 0.50 | 36.0 | 2.76e-01 | 91.1% | 38.3% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.37e-01 | 100.0% | 69.4% |
ECOD (75)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944534 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.85 | 65.0 | 4.55e-01 | 82.2% | 93.8% |
| 4110878 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 60.0 | 6.05e-01 | 86.7% | 100.0% |
| 4007999 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.77 | 66.0 | 4.73e-01 | 100.0% | 37.8% |
| 4147366 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.77 | 68.0 | 6.70e-01 | 100.0% | 95.8% |
| 3504519 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.77 | 65.0 | 4.73e-01 | 100.0% | 37.7% |
| 5029405 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.76 | 66.0 | 6.26e-01 | 100.0% | 87.3% |
| 4139090 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.76 | 66.0 | 6.24e-01 | 100.0% | 87.3% |
| 3230533 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 61.0 | 6.18e-01 | 93.3% | 93.3% |
| 4953223 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.75 | 64.0 | 6.27e-01 | 100.0% | 92.0% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 63.0 | 5.69e-01 | 100.0% | 72.3% |
| 4368811 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.74 | 64.0 | 6.07e-01 | 100.0% | 85.5% |
| 4957377 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.74 | 64.0 | 5.79e-01 | 100.0% | 71.4% |
| 5043979 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 63.0 | 5.53e-01 | 100.0% | 84.3% |
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.74 | 60.0 | 5.69e-01 | 95.6% | 81.8% |
| 4076879 | 4.1.1.87 ↗ | beta barrels › SH3 › SH3 › SH3 › FLgD_tudor | 0.73 | 59.0 | 5.79e-01 | 95.6% | 94.0% |
| 4041343 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.73 | 60.0 | 5.88e-01 | 95.6% | 100.0% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.73 | 63.0 | 5.26e-01 | 100.0% | 58.7% |
| 197051 | 4.1.1.74 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3247 | 0.73 | 63.0 | 5.01e-01 | 100.0% | 68.8% |
| 5035177 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.72 | 62.0 | 5.93e-01 | 100.0% | 83.3% |
| 4932434 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.72 | 61.0 | 5.38e-01 | 100.0% | 67.1% |
| 4478186 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 59.0 | 5.91e-01 | 95.6% | 97.8% |
| 3230113 | 4.1.1.315 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 | 0.71 | 57.0 | 3.36e-01 | 95.6% | 33.4% |
| 3275832 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.71 | 60.0 | 5.70e-01 | 97.8% | 92.7% |
| 3954254 | 4.1.1.387 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c | 0.71 | 60.0 | 5.38e-01 | 100.0% | 83.1% |
| 4985100 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 61.0 | 5.94e-01 | 100.0% | 92.0% |
| 2561577 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.70 | 59.0 | 5.45e-01 | 100.0% | 73.8% |
| 3913687 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.70 | 59.0 | 4.81e-01 | 100.0% | 50.0% |
| 4813032 | 4.1.1.328 ↗ | beta barrels › SH3 › SH3 › SH3 › Sm_like | 0.70 | 60.0 | 5.07e-01 | 100.0% | 81.0% |
| 3266485 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 58.0 | 4.23e-01 | 100.0% | 51.4% |
| 3978624 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.70 | 58.0 | 4.29e-01 | 100.0% | 40.8% |
| 5003618 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.69 | 57.0 | 5.79e-01 | 95.6% | 95.6% |
| 3799904 | 4.1.1.315 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 | 0.69 | 58.0 | 3.41e-01 | 100.0% | 20.0% |
| 4165723 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.69 | 56.0 | 5.12e-01 | 100.0% | 72.3% |
| 4951012 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.68 | 56.0 | 5.51e-01 | 100.0% | 88.0% |
| 3920668 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.68 | 56.0 | 3.69e-01 | 100.0% | 32.7% |
| 5052895 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 47.0 | 4.38e-01 | 77.8% | 60.0% |
| 3608938 | 220.1.1.167 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 | 0.67 | 54.0 | 4.22e-01 | 100.0% | 61.7% |
| 5056777 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 50.0 | 4.16e-01 | 95.6% | 46.3% |
| 4024913 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 54.0 | 4.94e-01 | 100.0% | 72.3% |
| 5064007 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.66 | 56.0 | 3.82e-01 | 100.0% | 31.1% |
| 3996000 | 220.1.1.167 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 | 0.66 | 54.0 | 4.20e-01 | 100.0% | 62.6% |
| 3263031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 54.0 | 4.94e-01 | 100.0% | 76.9% |
| 4034190 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.66 | 53.0 | 4.00e-01 | 100.0% | 36.9% |
| 3506170 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 54.0 | 3.78e-01 | 100.0% | 58.2% |
| 3979962 | 9.1.1.69 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N | 0.65 | 55.0 | 4.47e-01 | 95.6% | 81.2% |
| 3707723 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 52.0 | 4.20e-01 | 100.0% | 69.5% |
| 3560712 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.65 | 54.0 | 4.24e-01 | 100.0% | 66.7% |
| 3906424 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.65 | 52.0 | 3.88e-01 | 100.0% | 49.3% |
| 3777243 | 220.1.1.161 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 | 0.64 | 51.0 | 3.86e-01 | 100.0% | 54.8% |
| 3388697 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.64 | 52.0 | 4.40e-01 | 100.0% | 52.5% |
| 3758839 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.63 | 51.0 | 3.68e-01 | 100.0% | 60.0% |
| 3610045 | 220.1.1.43 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH | 0.63 | 51.0 | 3.86e-01 | 100.0% | 60.8% |
| 5029334 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.63 | 54.0 | 3.69e-01 | 100.0% | 37.5% |
| 3260650 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 50.0 | 3.99e-01 | 100.0% | 65.5% |
| 3596153 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 51.0 | 4.01e-01 | 100.0% | 66.7% |
| 4937917 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 43.0 | 4.21e-01 | 77.8% | 100.0% |
| 3252094 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 49.0 | 3.84e-01 | 100.0% | 65.2% |
| 1772988 | 702.1.1.7 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_3 | 0.61 | 47.0 | 3.12e-01 | 86.7% | 26.3% |
| 4676513 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.59 | 50.0 | 3.42e-01 | 100.0% | 33.9% |
| 3840563 | 11.1.1.67 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 | 0.59 | 43.0 | 2.87e-01 | 75.6% | 64.7% |
| 5055079 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.59 | 47.0 | 4.43e-01 | 95.6% | 88.3% |
| 4108617 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 40.0 | 2.21e-01 | 73.3% | 18.5% |
| 5083534 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.59 | 42.0 | 2.97e-01 | 82.2% | 85.9% |
| 4970510 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.58 | 50.0 | 4.45e-01 | 97.8% | 83.1% |
| 5075769 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.58 | 49.0 | 4.39e-01 | 97.8% | 81.5% |
| 4982561 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.58 | 45.0 | 4.58e-01 | 100.0% | 100.0% |
| 3997716 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.57 | 48.0 | 4.17e-01 | 100.0% | 82.7% |
| 5043685 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 48.0 | 4.25e-01 | 100.0% | 100.0% |
| 7384 | 219.1.1.21 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 | 0.55 | 46.0 | 3.12e-01 | 100.0% | 34.6% |
| 4968336 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 44.0 | 2.81e-01 | 100.0% | 17.1% |
| 4393143 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 39.0 | 3.49e-01 | 100.0% | 52.9% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.53 | 46.0 | 3.73e-01 | 100.0% | 56.8% |
| 3601907 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.53 | 38.0 | 2.66e-01 | 82.2% | 41.3% |
| 5011877 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.51 | 41.0 | 3.45e-01 | 100.0% | 90.0% |
| 4954768 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.42e-01 | 100.0% | 49.4% |
D2
high
residues 60-170
D3
high
residues 177-261
D4
high
residues 288-361
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 36.0 | 3.65e-01 | 86.5% | 51.3% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.64 | 40.0 | 3.69e-01 | 95.9% | 48.0% |
| 2lmlA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.63 | 51.0 | 4.85e-01 | 89.2% | 94.3% |
| 3o6xA02 | 1.20.120.1560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 43.0 | 3.48e-01 | 73.0% | 83.1% |
| 1fadA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 48.0 | 4.50e-01 | 95.9% | 69.5% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 42.0 | 3.68e-01 | 73.0% | 93.5% |
| 2h21A02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.59 | 41.0 | 3.21e-01 | 71.6% | 95.2% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.58 | 36.0 | 3.11e-01 | 86.5% | 38.7% |
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.58 | 46.0 | 4.70e-01 | 89.2% | 98.6% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 35.0 | 3.65e-01 | 77.0% | 67.2% |
| 2pvjA01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.56 | 48.0 | 3.47e-01 | 98.6% | 68.2% |
| 1br2A03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.55 | 45.0 | 4.21e-01 | 90.5% | 73.7% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.54 | 50.0 | 5.08e-01 | 100.0% | 100.0% |
| 2eduA01 | 1.10.150.280 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AF1531-like domain | 0.54 | 46.0 | 4.50e-01 | 95.9% | 98.8% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 36.0 | 3.26e-01 | 71.6% | 89.8% |
| 3nl6C02 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 45.0 | 3.01e-01 | 94.6% | 82.0% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.53 | 44.0 | 3.60e-01 | 98.6% | 91.1% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.53 | 39.0 | 3.91e-01 | 91.9% | 77.6% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.52 | 38.0 | 3.41e-01 | 77.0% | 90.6% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 44.0 | 3.67e-01 | 97.3% | 84.8% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 37.0 | 3.73e-01 | 91.9% | 74.7% |
| 4i16A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 42.0 | 4.01e-01 | 94.6% | 75.6% |
| 1bgcA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 43.0 | 3.38e-01 | 90.5% | 91.8% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940797 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.68 | 48.0 | 4.63e-01 | 100.0% | 65.5% |
| 4367207 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.67 | 46.0 | 4.14e-01 | 73.0% | 82.9% |
| 3476351 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.66 | 41.0 | 3.94e-01 | 95.9% | 54.1% |
| 3589798 | 632.1.1.14 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › EzrA | 0.66 | 46.0 | 4.27e-01 | 73.0% | 91.6% |
| 3577216 | 5050.1.1.23 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CLN3 | 0.64 | 43.0 | 3.45e-01 | 70.3% | 54.9% |
| 4464616 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.63 | 44.0 | 4.12e-01 | 73.0% | 88.9% |
| 3471656 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.62 | 46.0 | 4.47e-01 | 77.0% | 71.2% |
| 4029769 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.62 | 51.0 | 3.41e-01 | 97.3% | 36.2% |
| 4428399 | 632.11.1.10 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › EzrA | 0.62 | 43.0 | 3.78e-01 | 73.0% | 78.2% |
| 3286103 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.61 | 38.0 | 3.77e-01 | 97.3% | 57.5% |
| 3165689 | 601.7.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NTase_sub_bind | 0.58 | 47.0 | 3.83e-01 | 90.5% | 84.1% |
| 3701760 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.56 | 35.0 | 2.89e-01 | 91.9% | 32.9% |
| 4435773 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.55 | 46.0 | 3.54e-01 | 90.5% | 40.6% |
| 4929285 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.55 | 37.0 | 3.95e-01 | 89.2% | 81.5% |
| 3982352 | 4207.1.2.90 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › FxsA | 0.54 | 46.0 | 4.03e-01 | 100.0% | 62.7% |
| 5046868 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.54 | 45.0 | 3.46e-01 | 93.2% | 69.7% |
| 4681331 | 3921.1.1.0 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D | 0.54 | 46.0 | 3.48e-01 | 95.9% | 92.8% |
| 3472756 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.53 | 38.0 | 2.64e-01 | 78.4% | 21.7% |
| 3592945 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.52 | 39.0 | 3.57e-01 | 78.4% | 91.6% |
| 5066829 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.52 | 46.0 | 3.32e-01 | 100.0% | 34.3% |
| 3349964 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 43.0 | 3.56e-01 | 91.9% | 84.4% |
| 3655699 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.52 | 39.0 | 3.00e-01 | 81.1% | 50.6% |
| 3398736 | 226.1.1.5 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ | 0.51 | 37.0 | 3.17e-01 | 78.4% | 83.1% |
| 3543876 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 37.0 | 3.31e-01 | 100.0% | 52.7% |