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SRR1747046_scaffold_45_prodigal-single.1__X__X__00261
Bact-VirSRR1747046_scaffold_45_prodigal-single.1__X__X__00261
Identity
- Kingdom:
- phage
Quality
51.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-71_114-157
D2
medium
residues 73-112
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.73 | 45.0 | 2.76e-01 | 100.0% | 10.3% |
| 4f0aB02 | 3.30.2460.20 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain | 0.70 | 55.0 | 4.85e-01 | 97.5% | 57.4% |
| 2uvaG09 | 2.40.128.700 | Mainly Beta › Beta Barrel › Lipocalin › | 0.67 | 50.0 | 3.69e-01 | 85.0% | 82.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.65 | 55.0 | 3.46e-01 | 100.0% | 18.0% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.64 | 51.0 | 3.47e-01 | 100.0% | 41.5% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.62 | 45.0 | 3.74e-01 | 90.0% | 39.7% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.59 | 41.0 | 3.45e-01 | 80.0% | 40.0% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.59 | 46.0 | 3.12e-01 | 97.5% | 57.5% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.59 | 43.0 | 2.66e-01 | 87.5% | 80.7% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.59 | 43.0 | 2.49e-01 | 85.0% | 96.1% |
| 2py5A05 | 4.10.80.20 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 | 0.59 | 39.0 | 3.98e-01 | 72.5% | 96.7% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.59 | 42.0 | 3.49e-01 | 80.0% | 40.3% |
| 3dn7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 40.0 | 2.87e-01 | 75.0% | 71.7% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 48.0 | 3.60e-01 | 100.0% | 38.7% |
| 3es1A01 | 2.20.70.150 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 40.0 | 4.06e-01 | 75.0% | 81.1% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.57 | 43.0 | 2.85e-01 | 90.0% | 19.0% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.57 | 42.0 | 2.64e-01 | 90.0% | 86.7% |
| 3j7yU00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 40.0 | 2.99e-01 | 77.5% | 29.7% |
| 2jl6101 | 2.20.150.30 | Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › | 0.56 | 41.0 | 4.06e-01 | 87.5% | 90.7% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.55 | 45.0 | 3.47e-01 | 100.0% | 38.4% |
| 3ggdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 39.0 | 2.44e-01 | 95.0% | 12.8% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 37.0 | 3.29e-01 | 75.0% | 43.9% |
| 2iieA01 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.53 | 44.0 | 3.29e-01 | 95.0% | 37.0% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 36.0 | 2.32e-01 | 97.5% | 11.6% |
| 2rckA01 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.52 | 39.0 | 2.61e-01 | 95.0% | 49.1% |
| 3ie7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 38.0 | 2.39e-01 | 87.5% | 37.5% |
| 2erjB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 2.98e-01 | 90.0% | 86.5% |
| 2ogjA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.51 | 35.0 | 2.50e-01 | 100.0% | 17.4% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.51 | 42.0 | 3.26e-01 | 100.0% | 39.2% |
| 1p5uB00 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.51 | 37.0 | 2.58e-01 | 80.0% | 37.6% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 42.0 | 2.48e-01 | 97.5% | 11.0% |
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.51 | 36.0 | 2.82e-01 | 75.0% | 33.3% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.50 | 35.0 | 2.35e-01 | 82.5% | 27.3% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 41.0 | 3.19e-01 | 100.0% | 77.2% |
| 2di8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.04e-01 | 90.0% | 80.9% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4487061 | 328.8.1.1 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 | 0.85 | 50.0 | 3.16e-01 | 100.0% | 13.5% |
| 3608759 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.83 | 58.0 | 4.54e-01 | 75.0% | 35.3% |
| 3238872 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.76 | 55.0 | 3.55e-01 | 100.0% | 16.8% |
| 3649132 | 109.4.1.888 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N | 0.76 | 56.0 | 3.12e-01 | 92.5% | 5.9% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.75 | 61.0 | 5.91e-01 | 95.0% | 100.0% |
| 3220090 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.72 | 63.0 | 3.53e-01 | 100.0% | 9.0% |
| 2841930 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.71 | 57.0 | 3.35e-01 | 95.0% | 42.8% |
| 3387999 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.70 | 59.0 | 3.67e-01 | 100.0% | 17.7% |
| 3848951 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.68 | 51.0 | 4.19e-01 | 82.5% | 68.0% |
| 3709357 | 2003.1.1.59 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 | 0.67 | 56.0 | 3.57e-01 | 100.0% | 50.9% |
| 3751898 | 145.1.1.32 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 | 0.66 | 47.0 | 4.11e-01 | 82.5% | 80.0% |
| 4952838 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.66 | 54.0 | 3.32e-01 | 100.0% | 15.1% |
| 3588825 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.65 | 52.0 | 2.97e-01 | 97.5% | 85.9% |
| 3555682 | 109.4.1.1397 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 | 0.65 | 47.0 | 2.59e-01 | 92.5% | 5.0% |
| 3189438 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.64 | 51.0 | 3.06e-01 | 92.5% | 13.5% |
| 3405388 | 101.1.2.664 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC, WH_GTF3C1_N | 0.64 | 51.0 | 2.93e-01 | 100.0% | 8.9% |
| 5058189 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.64 | 47.0 | 3.58e-01 | 80.0% | 30.5% |
| 4408828 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 52.0 | 3.08e-01 | 95.0% | 14.0% |
| 3456292 | 2.1.1.134 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GIDE | 0.63 | 43.0 | 2.94e-01 | 95.0% | 17.2% |
| 3988836 | 706.2.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 | 0.63 | 51.0 | 4.66e-01 | 100.0% | 66.7% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 50.0 | 3.75e-01 | 100.0% | 32.5% |
| 3617432 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 44.0 | 3.89e-01 | 80.0% | 58.5% |
| 5000532 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.62 | 48.0 | 3.02e-01 | 70.0% | 13.7% |
| 3223309 | 11.1.1.934 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C | 0.62 | 50.0 | 3.11e-01 | 97.5% | 72.4% |
| 4009415 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.61 | 47.0 | 3.56e-01 | 95.0% | 31.7% |
| 3993158 | 304.9.1.25 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_7 | 0.60 | 51.0 | 3.46e-01 | 100.0% | 72.5% |
| 3404839 | 385.1.1.0 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines | 0.60 | 47.0 | 3.62e-01 | 100.0% | 34.8% |
| 5004937 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.60 | 48.0 | 3.10e-01 | 97.5% | 21.7% |
| 3919375 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.59 | 44.0 | 3.34e-01 | 80.0% | 32.0% |
| 4208391 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 43.0 | 3.24e-01 | 77.5% | 27.0% |
| 3870810 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 45.0 | 2.39e-01 | 90.0% | 16.3% |
| 4979129 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 41.0 | 2.87e-01 | 72.5% | 19.5% |
| 5074066 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 43.0 | 3.01e-01 | 70.0% | 20.0% |
| 3633198 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.58 | 45.0 | 3.67e-01 | 100.0% | 42.2% |
| 2643151 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.58 | 41.0 | 2.99e-01 | 85.0% | 68.3% |
| 3285052 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.57 | 45.0 | 2.79e-01 | 97.5% | 37.4% |
| 4938355 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 43.0 | 3.01e-01 | 72.5% | 20.0% |
| 5029398 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 3.48e-01 | 100.0% | 36.7% |
| 4839008 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 41.0 | 3.45e-01 | 82.5% | 58.9% |
| 5037829 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.56 | 47.0 | 3.64e-01 | 100.0% | 66.0% |
| 3290943 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 3.04e-01 | 80.0% | 29.5% |
| 4134586 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 38.0 | 2.97e-01 | 97.5% | 35.3% |
| 4968312 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.53 | 38.0 | 2.67e-01 | 100.0% | 87.9% |
| 4957499 | 223.1.1.192 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7287 | 0.53 | 42.0 | 2.99e-01 | 85.0% | 54.9% |
| 3244416 | 7516.1.1.69 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 | 0.53 | 41.0 | 2.45e-01 | 92.5% | 10.4% |
| 4921900 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.52 | 42.0 | 2.90e-01 | 95.0% | 83.5% |
| 4028589 | 59.1.1.7 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Tau95_N | 0.52 | 36.0 | 2.85e-01 | 75.0% | 29.5% |
| 4985492 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 39.0 | 2.51e-01 | 92.5% | 71.9% |
| 4019457 | 213.1.1.77 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_7 | 0.52 | 45.0 | 2.86e-01 | 100.0% | 55.2% |
| 4474382 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.51 | 40.0 | 2.95e-01 | 100.0% | 30.4% |
| 2997715 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.51 | 38.0 | 2.48e-01 | 97.5% | 63.1% |
| 3280477 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.50 | 37.0 | 2.64e-01 | 70.0% | 19.3% |