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SRR1747046_scaffold_4_prodigal-single.1__X__X__00076
Bact-VirSRR1747046_scaffold_4_prodigal-single.1__X__X__00076
Identity
- Kingdom:
- phage
Quality
93.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-70
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a4yA01 | 2.60.200.50 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.65 | 39.0 | 3.35e-01 | 84.1% | 38.8% |
| 2ivdB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 46.0 | 3.43e-01 | 93.7% | 32.9% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 39.0 | 3.96e-01 | 100.0% | 74.6% |
| 7vtgA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 34.0 | 2.25e-01 | 96.8% | 14.3% |
| 1jcuA00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.51 | 41.0 | 3.06e-01 | 100.0% | 76.4% |
| 3fd9A02 | 1.20.1270.190 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 42.0 | 3.75e-01 | 93.7% | 95.8% |
| 3hgmA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 41.0 | 3.25e-01 | 95.2% | 78.2% |
| 1jcfA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 43.0 | 3.94e-01 | 100.0% | 96.6% |
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.50 | 42.0 | 3.64e-01 | 100.0% | 75.2% |
| 3vwaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 35.0 | 2.78e-01 | 76.2% | 84.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3388952 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 49.0 | 3.49e-01 | 84.1% | 86.0% |
| 4276893 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.60 | 41.0 | 2.77e-01 | 73.0% | 80.4% |
| 4116360 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.58 | 40.0 | 4.07e-01 | 98.4% | 75.0% |
| 3190243 | 2004.1.1.232 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEXQc_Suv3 | 0.56 | 39.0 | 2.66e-01 | 98.4% | 18.8% |
| 3596153 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.80e-01 | 98.4% | 53.7% |
| 4192065 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.55 | 37.0 | 2.68e-01 | 71.4% | 41.0% |
| 4933326 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.55 | 44.0 | 3.98e-01 | 90.5% | 86.4% |
| 4648671 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.54 | 39.0 | 2.88e-01 | 81.0% | 91.7% |
| 5079820 | 2002.1.1.43 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth | 0.52 | 42.0 | 2.93e-01 | 98.4% | 88.5% |
| 3343807 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 39.0 | 3.69e-01 | 88.9% | 85.9% |
| 3363496 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.52 | 41.0 | 3.87e-01 | 98.4% | 98.8% |
| 4104653 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.51 | 40.0 | 2.89e-01 | 90.5% | 92.1% |
| 3724506 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.51 | 40.0 | 2.39e-01 | 92.1% | 13.4% |
| 5056777 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.89e-01 | 92.1% | 92.5% |
| 138354 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.51 | 41.0 | 3.25e-01 | 95.2% | 78.2% |
| 4928641 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.51 | 40.0 | 3.81e-01 | 87.3% | 98.7% |
| 3378713 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.50 | 38.0 | 2.93e-01 | 82.5% | 68.4% |