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SRR1747046_scaffold_4_prodigal-single.1__X__X__00093

Bact-Vir

SRR1747046_scaffold_4_prodigal-single.1__X__X__00093

Identity

Kingdom:
phage

Quality

52.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-151_173-207_223-261_291-316
PDB
D2 high residues 376-511
PDB
D3 high residues 606-827
PDB
D4 high residues 867-968
PDB
D5 high residues 1007-1212_1271-1304
PDB
D6 medium residues 152-172_208-222_262-290
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 56.0 4.66e-01 81.5% 70.0%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 63.0 5.23e-01 100.0% 84.3%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 55.0 4.79e-01 86.2% 70.5%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 54.0 4.69e-01 86.2% 71.9%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 52.0 4.45e-01 83.1% 58.6%
4h40A01 2.60.40.3730 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.66 58.0 4.38e-01 98.5% 72.2%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 59.0 5.04e-01 100.0% 76.9%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 52.0 4.30e-01 83.1% 68.8%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.65 52.0 4.19e-01 86.2% 63.4%
2vzsA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 52.0 4.21e-01 87.7% 61.0%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 51.0 4.29e-01 86.2% 69.4%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 49.0 4.31e-01 83.1% 67.3%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.64 50.0 4.28e-01 83.1% 64.4%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.94e-01 100.0% 80.0%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 56.0 4.89e-01 100.0% 82.8%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 50.0 4.07e-01 86.2% 65.0%
2ii7H00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.63 45.0 3.86e-01 76.9% 63.2%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 4.32e-01 98.5% 73.7%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.71e-01 86.2% 72.2%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 47.0 4.06e-01 83.1% 73.3%
3zssA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 3.92e-01 83.1% 60.2%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 4.07e-01 86.2% 75.0%
1qppA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 3.98e-01 86.2% 71.1%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.61 47.0 3.68e-01 86.2% 53.7%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 3.76e-01 81.5% 68.7%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.49e-01 84.6% 66.5%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 51.0 3.98e-01 98.5% 73.6%
1kv3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.55e-01 76.9% 65.0%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.58 42.0 3.54e-01 78.5% 74.4%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 3.51e-01 98.5% 46.2%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.58 42.0 2.95e-01 80.0% 66.7%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 49.0 4.64e-01 100.0% 100.0%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.51e-01 75.4% 62.7%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 48.0 4.31e-01 100.0% 86.3%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 49.0 3.92e-01 98.5% 70.5%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.56 45.0 3.11e-01 87.7% 36.0%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.29e-01 96.9% 41.5%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.55 38.0 3.35e-01 96.9% 46.2%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.54 40.0 2.99e-01 80.0% 65.3%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.00e-01 100.0% 77.1%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 45.0 4.00e-01 100.0% 81.2%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.19e-01 89.2% 60.9%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 44.0 3.62e-01 100.0% 62.8%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.52 42.0 2.95e-01 96.9% 36.3%
3hwjA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.52 42.0 3.27e-01 90.8% 69.1%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.62e-01 100.0% 85.1%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.50 38.0 3.03e-01 86.2% 62.4%
4f7kA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 37.0 3.25e-01 84.6% 79.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943901 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 56.0 4.64e-01 81.5% 66.1%
3591587 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 54.0 4.52e-01 81.5% 51.8%
4976414 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 55.0 4.78e-01 83.1% 65.3%
5056337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 56.0 4.75e-01 86.2% 68.6%
4443635 11.1.1.249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_9 0.70 56.0 4.89e-01 86.2% 66.3%
4019584 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.70 56.0 4.95e-01 87.7% 75.8%
2117377 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.70 56.0 4.62e-01 86.2% 67.9%
5019848 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.70 63.0 5.33e-01 100.0% 73.3%
4402197 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.69 54.0 4.80e-01 86.2% 74.7%
5009318 11.1.1.1353 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29262 0.69 53.0 4.58e-01 83.1% 68.0%
3226169 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 54.0 4.37e-01 86.2% 58.4%
5043352 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 54.0 4.69e-01 86.2% 69.0%
5036528 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 54.0 4.71e-01 84.6% 74.7%
4938062 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 51.0 4.30e-01 81.5% 65.5%
4968868 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 52.0 4.28e-01 83.1% 57.4%
5076799 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 51.0 4.26e-01 83.1% 60.9%
4929379 11.1.1.929 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28202 0.66 50.0 4.21e-01 81.5% 63.6%
4937356 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 50.0 4.08e-01 83.1% 60.8%
3990559 11.1.1.957 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_6th 0.66 51.0 3.92e-01 84.6% 48.7%
5012229 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 50.0 4.64e-01 80.0% 70.0%
5068959 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 60.0 5.43e-01 100.0% 77.6%
4999355 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 49.0 4.04e-01 81.5% 58.3%
5036727 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.65 52.0 3.14e-01 84.6% 16.8%
5021316 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.65 52.0 3.91e-01 86.2% 52.3%
166590 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.65 52.0 3.84e-01 86.2% 50.9%
3361920 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.65 51.0 4.37e-01 86.2% 70.5%
3935252 11.1.1.957 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_6th 0.64 49.0 4.08e-01 83.1% 67.0%
5079352 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 50.0 4.05e-01 84.6% 56.0%
4942975 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 45.0 3.77e-01 76.9% 86.1%
4591282 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.61 45.0 3.71e-01 78.5% 59.2%
3660684 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 4.16e-01 81.5% 92.2%
5076544 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.10e-01 83.1% 73.7%
3413760 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.60 53.0 4.06e-01 100.0% 60.0%
3217255 11.1.1.957 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_6th 0.60 46.0 4.00e-01 84.6% 71.4%
3268650 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 42.0 3.37e-01 75.4% 57.1%
3371040 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.59 41.0 2.98e-01 96.9% 27.6%
3491636 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 50.0 3.95e-01 100.0% 62.8%
3587189 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.58 51.0 3.97e-01 100.0% 71.0%
4383098 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.58 51.0 4.00e-01 100.0% 72.9%
4062229 11.1.1.31 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.58 50.0 4.30e-01 100.0% 84.8%
4940617 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.57 49.0 3.88e-01 100.0% 68.3%
4927194 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.23e-01 100.0% 83.6%
5038684 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 43.0 3.69e-01 83.1% 77.3%
4975556 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.13e-01 100.0% 86.4%
5041321 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 47.0 3.78e-01 89.2% 60.0%
5038984 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.17e-01 100.0% 77.1%
4927848 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.95e-01 100.0% 84.3%
2396496 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.55 48.0 4.07e-01 100.0% 80.9%
168141 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.55 46.0 4.07e-01 100.0% 79.8%
5081704 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 43.0 2.94e-01 87.7% 24.3%
3938968 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 44.0 3.66e-01 89.2% 58.3%
2705097 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.54 47.0 3.77e-01 100.0% 70.8%
3742573 11.1.5.34 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › LAG1-DNAbind 0.53 40.0 3.28e-01 86.2% 54.1%
4959959 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 3.19e-01 76.9% 84.0%
D7 medium residues 535-602
PDB